Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865556:139865592:[+] chr15:75703981:75704011:[-] nonBSJ supported CDS

circRNA 5':AUUACUGGUCUUCCACCAAAUCCAGAUCUUCCAGGAA 3'


            |:|||||| ||:| |||


target  3':CAGUGACCACACACUCCGAC----CUGGCCG--CCUC 5'

 -12.60 1 RIC-seq
chrX:139865556:139865619:[+] chr15:75703981:75704028:[-] nonBSJ supported CDS

circRNA 5':AUUACUGGUCUUCCACCAAAUCCAGAUCUUCCAGGAAAAUCCACGUCUUCCAGGAAAUCCAUGU 3'


            |:|||||| ||:| ||| |||| || || |||:


target  3':CAGUGACCACACACUCCGAC----CUGGCCG--CCUCU----UGCA------CCCCUACGUAUG 5'

 -14.00 14 RIC-seq
chrX:139866349:139866372:[+] chr15:75684636:75684653:[-] nonBSJ supported CDS

circRNA 5':CGUGUCUUCCAGCAAAUCCACGUC 3'


            |||: |||||| ||| |||


target  3': UACG---GGUCGUGAAGG-GCA 5'

 -18.20 10 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr15:75703981:75704011:[-] target 560386 chr15:75703992-75703993 G>GT SIN3A-related_intellectual_disability_syndrome_due_to_a_point_mutation ClinVar
chr15:75703981:75704028:[-] target 560386 chr15:75703992-75703993 G>GT SIN3A-related_intellectual_disability_syndrome_due_to_a_point_mutation ClinVar