Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866758:139866794:[+] chr9:129595941:129596001:[+] nonBSJ supported CDS

circRNA 5':UGUCUUC-CAA-CGU-----------------------CUCCAGUGUGCUGAUCU-UCUGACA 3'


            | |::| || ||| ||| :|||||:||||| ||||||


target  3':UCUGGGGUGUCGGCAUUCCGGCUUCUGGCUCCACGUACGAG--UACACGGCUAGAGAGACUGA 5'

 -33.50 40 RIC-seq
chrX:139866758:139866811:[+] chr9:129595930:129596001:[+] nonBSJ supported CDS

circRNA 5':UGUCUUC-CAA-CGU-----------------------CUCCAGUGUGCUGAUCU-UCUGACAUUCAGGUCUUCC-AGUGU 3'


            | |::| || ||| ||| :|||||:||||| |||||| |||| ||||


target  3':UCUGGGGUGUCGGCAUUCCGGCUUCUGGCUCCACGUACGAG--UACACGGCUAGAGAGACUG-------AGAACACUCACU 5'

 -35.40 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866758:139866794:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866758:139866811:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC