Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865639:139865682:[+] chr19:50435792:50435841:[+] nonBSJ supported CDS

circRNA 5': CUUCCAUCAAAUACAGAUCUUCCAGCUAAU---------------CCAUGUCUUCCAGA 3'


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target  3':AGAAGGUAGAC---------AAGGUCGAGGAAGAACUCCUCCCUCCGGUAUCGAAGGUC 5'

 -35.20 31 RIC-seq
chrX:139865640:139865682:[+] chr19:50435792:50435840:[+] nonBSJ supported CDS

circRNA 5': UUCCAUCAAAUACAGAUCUUCCAGCUAAU---------------CCAUGUCUUCCAGA 3'


            ||||||| |||||||| ||||: |||||||


target  3':GAAGGUAGAC---------AAGGUCGAGGAAGAACUCCUCCCUCCGGUAUCGAAGGUC 5'

 -32.30 2 RIC-seq
chrX:139865660:139865682:[+] chr19:50435792:50435829:[+] nonBSJ supported CDS

circRNA 5': CCAGCUAAU---------------CCAUGUCUUCCAGA 3'


            |||||| ||||: |||||||


target  3':AGGUCGAGGAAGAACUCCUCCCUCCGGUAUCGAAGGUC 5'

 -24.10 44 RIC-seq
chrX:139865661:139865682:[+] chr19:50435792:50435828:[+] nonBSJ supported CDS

circRNA 5': CAGCUAAU---------------CCAUGUCUUCCAGA 3'


            ||||| ||||: |||||||


target  3':GGUCGAGGAAGAACUCCUCCCUCCGGUAUCGAAGGUC 5'

 -21.00 2 RIC-seq