Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865613:139865655:[+] chr4:162306413:162306453:[-] nonBSJ supported 3UTR

circRNA 5':UCCA-UGUC-UUCCAAUAAUUUCAAGGUCUUCCAUCAAAU--ACAGA 3'


            || || | |||| :|||||||: ||||


target  3': GGACACUGUAAGG-----GAAGUUCCGUGUUUUAUAAUAUUUGUCA 5'

 -16.20 2 RIC-seq
chrX:139865799:139865849:[+] chr4:162459329:162459379:[-] nonBSJ supported CDS

circRNA 5':UCAGUGUCUUCCA--GAAAGAAAUCCAG-GUCUUCCAGUCAGUCAGUGUCUUCC 3'


            ||| |||||||| :||||| |||||| :|| || || ||||


target  3':CGUCUCAGAAGGUGUUUUUCUCUUCUCUACAGAAGUA-GGUGAGG-AC-GAAGU 5'

 -35.90 2 RIC-seq
chrX:139865904:139865958:[+] chr4:162459318:162459374:[-] nonBSJ supported CDS

circRNA 5':CGGAAAAAAUC-CAG-GUCUUCCAGCCAAUAU------AUGUCUUCCUGAAGAUCCACGUCUU 3'


            || ||| |||||||| |||||||| |||||| :||


target  3':CCCAGAAAGAUCGUCUCAGAAGGUGUUUUUCUCUUCUCUACAGAAG------UAGGUGAGGAC 5'

 -32.20 2 RIC-seq
chrX:139865927:139865980:[+] chr4:162306908:162306978:[-] nonBSJ supported CDS

circRNA 5': CCAAUAU--AUGUCU-----UCCUGAA--GAUC-CAC--GUCUUCCAGAAAAUCCAU----GUCUUCCAG 3'


            ||||: ||| || |||| :|: || :|||: ||| ||| ||||


target  3':AGGUUGGGUUUACUGACAUAAAGGAAAAAGUUGAAGUCACUAGAGUGUCAAAUUAAAUAACUCAGCAGGUA 5'

 -21.90 1 RIC-seq
chrX:139865952:139865979:[+] chr4:162306903:162306932:[-] nonBSJ supported CDS

circRNA 5':ACGUCUUCCAGAAAAUCCA------UGUC-UUCCA 3'


            |:|| |||| |:||| ||| ||||


target  3':CGUAG-AGGU----UGGGUUUACUGACAUAAAGGA 5'

 -15.30 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr4:162306903:162306932:[-] target - chr4:162306913-162306914 C>A LINC-JP ICGC
chr4:162306908:162306978:[-] target - chr4:162306913-162306914 C>A LINC-JP ICGC
chr4:162459318:162459374:[-] target - chr4:162459334-162459335 G>A LICA-CN ICGC
chr4:162459329:162459379:[-] target - chr4:162459334-162459335 G>A LICA-CN ICGC