Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865472:139865499:[+] chr1:110561015:110561043:[+] nonBSJ supported CDS

circRNA 5':AUGUC-UUCCGGACAAUCCAUGU-CUUCCA 3'


            ||| ||| | | ||||| || ||:||


target  3':GACAAAAAGUAC-GCUAGGUUCACGAGGGC 5'

 -16.20 1 RIC-seq
chrX:139865472:139865507:[+] chr1:110561019:110561058:[+] nonBSJ supported CDS

circRNA 5':AUGUCUUCCGG-ACAAUC------CAUGUCUUCCAAGAAGCUC 3'


            ||: ||: ||||: ||||: |||||| |||


target  3':AACGUAU-GCUAUGUUGACAAAAAGUACGCUAGGUUCA-CGA 5'

 -18.90 2 RIC-seq
chrX:139865472:139865509:[+] chr1:110561016:110561058:[+] nonBSJ supported CDS

circRNA 5':AUGUCUUCCGG-ACAAUC------CAUGUCUUCCAAGAAGCUCCA 3'


            ||: ||: ||||: ||||: |||||| |||||


target  3':AACGUAU-GCUAUGUUGACAAAAAGUACGCUAGGUUCA-CGAGGG 5'

 -26.40 34 RIC-seq
chrX:139865473:139865509:[+] chr1:110561016:110561058:[+] nonBSJ supported CDS

circRNA 5': UGUCUUCCGG-ACAAUC------CAUGUCUUCCAAGAAGCUCCA 3'


            ||: ||: ||||: ||||: |||||| |||||


target  3':AACGUAU-GCUAUGUUGACAAAAAGUACGCUAGGUUCA-CGAGGG 5'

 -26.40 2 RIC-seq
chrX:139865487:139865506:[+] chr1:110561045:110561063:[+] nonBSJ supported CDS

circRNA 5':UCCAUGUCUUCCAAGAAGCU 3'


            ||||:| || :|


target  3': GGUAUAACGUAUGCUAUGU 5'

 -6.50 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:110561015:110561043:[+] target - chr1:110561028-110561029 A>T PACA-CA ICGC
chr1:110561016:110561058:[+] target - chr1:110561028-110561029 A>T PACA-CA ICGC
chr1:110561019:110561058:[+] target - chr1:110561028-110561029 A>T PACA-CA ICGC