Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865424:139865490:[+] chr2:189860462:189860516:[+] nonBSJ supported CDS

circRNA 5':UCCAGAUAAUCCUGAGCUUCCAGAAAAUCCACAUCUUCCAGACAAUCCAUGUCUUCCGGACAA-UCCA 3'


            || || ||||| :|:||||| ||| ||| |||| || :|||:| || |||


target  3': GGAGUA--AGGACCUGGAGGUCCCUGCGGUAGAGACGGUC---------CAAGAGGUC-GUCGAGGA 5'

 -44.00 1 RIC-seq
chrX:139865470:139865509:[+] chr2:189860462:189860490:[+] nonBSJ supported CDS

circRNA 5':CCAUGUCUUCCGGACAAUCCAUGUCUUCCAAGAAGCUCCA 3'


            ||| ||| ||:| || :||| || ||||||


target  3': GUAGAGACGGUC---------CAAGAGG-UCGUCGAGGA 5'

 -26.00 1 RIC-seq
chrX:139865595:139865616:[+] chr2:189859293:189859314:[+] nonBSJ supported CDS

circRNA 5':UCCACGUCUUCCAGGAAAUCCA 3'


            |||||| ||| || |||


target  3':UGGUGCACCAGGCCCGAGAGGA 5'

 -21.00 1 RIC-seq
chrX:139865828:139865849:[+] chr2:189875522:189875545:[+] nonBSJ supported CDS

circRNA 5':UUCCAGUCAGU--CAGUGUCUUCC 3'


            ||| :||||: ||| |:||||


target  3':UGGGGUAGUCGAAGUCCCGGAAGA 5'

 -20.80 2 RIC-seq
chrX:139865984:139866000:[+] chr2:189876359:189876373:[+] nonBSJ supported CDS

circRNA 5':AUCCAUGUCUUCCAGUA 3'


            ||||| || :|||||


target  3':GAGGUA-AG-GGGUCAC 5'

 -14.40 2 RIC-seq
chrX:139866207:139866260:[+] chr2:189864195:189864248:[+] nonBSJ supported CDS

circRNA 5':GGUCUUCCAGGAAAUCCGUGUCUU-CCAGCAAGUCCACGUCUUCCAACAAAGCCA 3'


            |: |||||| ||: |: |||| |:||| | ||| || :||


target  3':ACGUCUGGUCCUCAUGGU-CGUCGUGGUCCACCGGGUCCUCCUGGUCGUCGUGGG 5'

 -36.30 2 RIC-seq
chrX:139866629:139866654:[+] chr2:189849531:189849557:[+] nonBSJ supported CDS

circRNA 5':AGCAUCUCCAGGGCUUCCAG-CAUCUG 3'


            |||| ||||||||| |||||


target  3':CCGUACCAAGACCGAAGGUCUGUAGAG 5'

 -28.50 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr2:189849531:189849557:[+] target 575406 chr2:189849540-189849541 G>A Ehlers-Danlos_syndrome,_type_4 ClinVar
chr2:189849531:189849557:[+] target 619227 chr2:189849551-189849552 C>G POLYMICROGYRIA_WITHOUT_VASCULAR-TYPE_EHLERS-DANLOS_SYNDROME|Polymicrogyria_with_or_without_vascular-type_Ehlers-Danlos_syndrome|Ehlers-Danlos_syndrome,_type_4 ClinVar
chr2:189849531:189849557:[+] target 2104015 chr2:189849556-189849557 C>A Ehlers-Danlos_syndrome,_type_4 ClinVar
chr2:189859293:189859314:[+] target 973734 chr2:189859293-189859294 AG>A Ehlers-Danlos_syndrome ClinVar
chr2:189859293:189859314:[+] target 2032118 chr2:189859294-189859295 G>A Ehlers-Danlos_syndrome,_type_4 ClinVar
chr2:189859293:189859314:[+] target 1067325 chr2:189859295-189859296 G>A Ehlers-Danlos_syndrome,_type_4 ClinVar
chr2:189859293:189859314:[+] target 101185 chr2:189859303-189859304 G>A Ehlers-Danlos_syndrome,_type_4|not_provided ClinVar
chr2:189859293:189859314:[+] target 101329 chr2:189859303-189859304 G>C Ehlers-Danlos_syndrome,_type_4 ClinVar
chr2:189859293:189859314:[+] target 3495471 chr2:189859312-189859313 G>T Familial_thoracic_aortic_aneurysm_and_aortic_dissection ClinVar
chr2:189859293:189859314:[+] target 3634090 chr2:189859313-189859314 G>A Ehlers-Danlos_syndrome,_type_4 ClinVar
chr2:189860462:189860490:[+] target 101453 chr2:189860464-189860465 G>A Ehlers-Danlos_syndrome,_type_4 ClinVar
chr2:189860462:189860516:[+] target 101453 chr2:189860464-189860465 G>A Ehlers-Danlos_syndrome,_type_4 ClinVar
chr2:189860462:189860516:[+] target 3009715 chr2:189860500-189860501 G>C Ehlers-Danlos_syndrome,_type_4 ClinVar
chr2:189864195:189864248:[+] target 101266 chr2:189864195-189864196 GGGTGCTGCTGGTCCTCCTGGGCCACCT>G Ehlers-Danlos_syndrome,_type_4 ClinVar
chr2:189864195:189864248:[+] target 1702196 chr2:189864196-189864197 G>A Ehlers-Danlos_syndrome ClinVar
chr2:189864195:189864248:[+] target 1786274 chr2:189864197-189864198 G>A Familial_thoracic_aortic_aneurysm_and_aortic_dissection ClinVar
chr2:189864195:189864248:[+] target 101395 chr2:189864197-189864198 G>T Ehlers-Danlos_syndrome,_type_4 ClinVar
chr2:189864195:189864248:[+] target 101455 chr2:189864205-189864206 G>A Ehlers-Danlos_syndrome,_type_4|Polymicrogyria_with_or_without_vascular-type_Ehlers-Danlos_syndrome|Familial_thoracic_aortic_aneurysm_and_aortic_dissection ClinVar
chr2:189864195:189864248:[+] target 101400 chr2:189864208-189864209 CCTCCTGGGCCACCTGGTGCTGCTGGTA>C Ehlers-Danlos_syndrome,_type_4 ClinVar
chr2:189864195:189864248:[+] target 101124 chr2:189864214-189864215 G>A Ehlers-Danlos_syndrome,_type_4 ClinVar
chr2:189864195:189864248:[+] target 101436 chr2:189864215-189864216 G>A Ehlers-Danlos_syndrome,_type_4 ClinVar
chr2:189864195:189864248:[+] target 2036633 chr2:189864223-189864224 G>C Ehlers-Danlos_syndrome,_type_4 ClinVar
chr2:189864195:189864248:[+] target 654047 chr2:189864233-189864234 G>A Ehlers-Danlos_syndrome,_type_4 ClinVar
chr2:189864195:189864248:[+] target 101292 chr2:189864242-189864243 G>A Ehlers-Danlos_syndrome,_type_4 ClinVar
chr2:189876359:189876373:[+] target 520518 chr2:189876366-189876367 G>T Ehlers-Danlos_syndrome,_type_4 ClinVar
chr2:189876359:189876373:[+] target 2087847 chr2:189876370-189876371 G>A Ehlers-Danlos_syndrome,_type_4 ClinVar
chr2:189864195:189864248:[+] target - chr2:189864202-189864203 G>T LICA-CN ICGC