Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865950:139865978:[+] chr8:42939964:42939990:[+] nonBSJ supported CDS

circRNA 5':CCACGUCUUCCAGAAAAUCCAUGUCUUCC 3'


            |||: || |||||||||


target  3':AGUGU-GACUAAAAGAUC-GUACAGAAGU 5'

 -15.40 1 RIC-seq
chrX:139865635:139865683:[+] chr8:42933520:42933558:[+] nonBSJ supported Intron

circRNA 5':AGGUCUUCCAUCAAAUACAGAUCUUC-CAGCUAAUCCAUGUCUUCCAGAA 3'


            ||: ||| |||: | ||:|| ||: || |||


target  3':ACCG---------UUACUUCUGUACGAGUUGAGUUCUAACG--AGUUCUA 5'

 -10.10 15 RIC-seq
chrX:139865635:139865683:[+] chr8:42933521:42933558:[+] nonBSJ supported Intron

circRNA 5':AGGUCUUCCAUCAAAUACAGAUCUUC-CAGCUAAUCCAUGUCUUCCAGAA 3'


            ||: ||| |||: | ||:|| ||: || |||


target  3':ACCG---------UUACUUCUGUACGAGUUGAGUUCUAACG--AGUUCU 5'

 -10.10 2 RIC-seq