Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865628:139865648:[+] chr3:39566846:39566864:[+] nonBSJ supported 3UTR

circRNA 5':AAUUUCAAGGUCUUCCAUCAA 3'


            ||||||| |||||| :||


target  3':AUAAAGUUG-AGAAGG-GGUA 5'

 -15.40 1 RIC-seq
chrX:139865628:139865661:[+] chr3:39566837:39566864:[+] nonBSJ supported 3UTR

circRNA 5':AAUUUCAAGGUCUUCCAUCAAAUACAGAUCUUCC 3'


            ||||||| |||||| :|| ||::|


target  3':AUAAAGUUG-AGAAGG-GGUAAAA----AGGGGU 5'

 -15.90 31 RIC-seq
chrX:139865751:139865821:[+] chr3:39565941:39565988:[+] nonBSJ supported 3UTR

circRNA 5': UCCAGUCAAUCAGUGUCUUCC-AGAAAGAAAUCCAGGUCUUCCAGUCAAUCA-GUGUCUUCCAGA---AAGAAAUC 3'


            |||| :||||:: ||||||| || ||:|||| |||| ||||||:


target  3':AAGGUG-------UACAGGGACCUCUUUCU---------------------GUACAUAGAA-GUCUAACUUCUUUGA 5'

 -28.70 1 RIC-seq
chrX:139865760:139865818:[+] chr3:39565943:39565986:[+] nonBSJ supported 3UTR

circRNA 5':UCA-GUGUCUUCC-AGAAAGAAAUCCAGGUCUUCCAGUCAAUCA-GUGUCUUCCAGA---AAGAA 3'


            || :||||:: ||||||| || ||:|||| |||| |||||


target  3':GGUGUACAGGGACCUCUUUCU---------------------GUACAUAGAA-GUCUAACUUCUUU 5'

 -25.00 1 RIC-seq
chrX:139865760:139865821:[+] chr3:39565941:39565986:[+] nonBSJ supported 3UTR

circRNA 5':UCA-GUGUCUUCC-AGAAAGAAAUCCAGGUCUUCCAGUCAAUCA-GUGUCUUCCAGA---AAGAAAUC 3'


            || :||||:: ||||||| || ||:|||| |||| ||||||:


target  3':GGUGUACAGGGACCUCUUUCU---------------------GUACAUAGAA-GUCUAACUUCUUUGA 5'

 -27.80 35 RIC-seq
chrX:139865762:139865821:[+] chr3:39565941:39565983:[+] nonBSJ supported 3UTR

circRNA 5':AGUGUCUUCC-AGAAAGAAAUCCAGGUCUUCCAGUCAAUCA-GUGUCUUCCAGA---AAGAAAUC 3'


            |||||:: ||||||| || ||:|||| |||| ||||||:


target  3':GUACAGGGACCUCUUUCU---------------------GUACAUAGAA-GUCUAACUUCUUUGA 5'

 -27.40 2 RIC-seq
chrX:139865780:139865821:[+] chr3:39565941:39565988:[+] nonBSJ supported 3UTR

circRNA 5':AUCCAGGUCUUCC---AGUCAAUCA-GUGUCUUCCAGA---AAGAAAUC 3'


            |||| :| |:|| || || ||:|||| |||| ||||||:


target  3':AAGGUGUACAGGGACCUCUUUCUGUACAUAGAA-GUCUAACUUCUUUGA 5'

 -27.60 1 RIC-seq
chrX:139865786:139865821:[+] chr3:39565941:39565981:[+] nonBSJ supported 3UTR

circRNA 5': GUCUUCC-AGUCAAUCA-GUGUCUUCCAGA---AAGAAAUC 3'


            |||:: || || ||:|||| |||| ||||||:


target  3':ACAGGGACCUCUUUCUGUACAUAGAA-GUCUAACUUCUUUGA 5'

 -21.80 1 RIC-seq
chrX:139865801:139865821:[+] chr3:39565941:39565963:[+] nonBSJ supported 3UTR

circRNA 5':AGUGUCUUCCAGA---AAGAAAUC 3'


            ||:|||| |||| ||||||:


target  3':ACAUAGAA-GUCUAACUUCUUUGA 5'

 -17.20 1 RIC-seq
chrX:139865803:139865821:[+] chr3:39565941:39565962:[+] nonBSJ supported 3UTR

circRNA 5': UGUCUUCCAGA---AAGAAAUC 3'


            |:|||| |||| ||||||:


target  3':CAUAGAA-GUCUAACUUCUUUGA 5'

 -13.50 1 RIC-seq
chrX:139865954:139865980:[+] chr3:39566950:39566979:[+] nonBSJ supported 3UTR

circRNA 5': GUCUUCCAGAAAAUCCAUGU-CU-UCCAG 3'


            | ||||| |:|| || || ||||


target  3':ACUGAAGGGGAGAUGGGAUCAUGACAGGUA 5'

 -17.80 25 RIC-seq
chrX:139865954:139865982:[+] chr3:39566119:39566140:[+] nonBSJ supported 3UTR

circRNA 5': GUCUU-CCAGAAAAUCCAUGUCUUCCAGAA 3'


            |: || |||| |:|| :|||||


target  3':ACGAAACGGUC--------AUAG-GGGUCUA 5'

 -14.80 1 RIC-seq
chrX:139866006:139866048:[+] chr3:39566101:39566149:[+] nonBSJ supported 3UTR

circRNA 5':CCAGUCUUCCAGAAAAUCCACGUCUUCCCAA----CAAUCCAA----GUCU 3'


            ||:| ||| ||| || |:|||| |||:|||| |||


target  3':UGUUAAAAGACGAAAC-GGU-CAUAGGGGUCUAACGUUGGGUUUCCACAGU 5'

 -23.20 15 RIC-seq
chrX:139866378:139866426:[+] chr3:39566773:39566824:[+] nonBSJ supported 3UTR

circRNA 5':ACA-AAGCCAU--------GUCUUCCAUCAAAUUAAUGUCUUCCAGCCUACUUGUGUC 3'


            || ||||||: |:|: :|||| || :|||: || ||:|


target  3':AGUCUUCGGUGUUCUUGUUCGGGUCUAGGUUUUG--ACUU-GGGUU---UGUUCAUAA 5'

 -19.70 33 RIC-seq
chrX:139866383:139866433:[+] chr3:39566793:39566839:[+] nonBSJ supported 3UTR

circRNA 5':GCCAUGUCUUCCAUCAAAUUAAUGUCUUCCAGCCUACUUGU----GUCU---UCCAAC 3'


            ||| ||| |||| || |||| || |:|: |||||


target  3': GGUUCAGUCUUUAGU--------AGUCU-UCGG-UGUUCUUGUUCGGGUCUAGGUUU 5'

 -18.60 1 RIC-seq
chrX:139866383:139866433:[+] chr3:39566793:39566840:[+] nonBSJ supported 3UTR

circRNA 5':GCCAUGUCUUCCAUCAAAUUAAUGUCUUCCAGCCUACUUGU----GUCU---UCCAAC 3'


            ||| ||| |||| || |||| || |:|: |||||


target  3':GGGUUCAGUCUUUAGU--------AGUCU-UCGG-UGUUCUUGUUCGGGUCUAGGUUU 5'

 -19.80 4 RIC-seq
chrX:139866388:139866426:[+] chr3:39566773:39566826:[+] nonBSJ supported 3UTR

circRNA 5': GUCUU---CCAUCAAAUUAAUGUCU---UCCA-------GCCU--ACUUGUGUC 3'


            ||| ||| ||| |:|: |||| :||: || ||:|


target  3':GUAGUCUUCGGU-GUUCUUGUUCGGGUCUAGGUUUUGACUUGGGUUUGUUCAUAA 5'

 -16.20 1 RIC-seq
chrX:139866392:139866433:[+] chr3:39566793:39566840:[+] nonBSJ supported 3UTR

circRNA 5':UCCAUCAAAUUAAUGUCUUCC--AGCCUACUUGU----GUCU---UCCAAC 3'


            ||| :|| || |||| || |:|: |||||


target  3':GGGUUCAGUCUU--UAGUAGUCUUCGG-UGUUCUUGUUCGGGUCUAGGUUU 5'

 -16.90 1 RIC-seq
chrX:139866405:139866433:[+] chr3:39566793:39566829:[+] nonBSJ supported 3UTR

circRNA 5':UGUCUUCC--AGCCUACUUGU----GUCU---UCCAAC 3'


            ||| || |||| || |:|: |||||


target  3':UUAGUAGUCUUCGG-UGUUCUUGUUCGGGUCUAGGUUU 5'

 -14.50 1 RIC-seq
chrX:139866468:139866498:[+] chr3:39566295:39566328:[+] nonBSJ supported 3UTR

circRNA 5':ACAAAGGUAUGUC-UUCCAACAAA-GGU--ACGUC 3'


            || |||| || :|| ||| ||:|


target  3':GGUGUCCACUAAGUGAGUAAGAUAACCACCUGUA 5'

 -9.20 23 RIC-seq
chrX:139865551:139865570:[+] chr3:39543730:39543749:[+] nonBSJ supported CDS

circRNA 5': CAGCAAUUACUGGUCUUCCA 3'


            ||||| | |::|||:|||


target  3':CGUCGUCUA-GGUCAGGAGGA 5'

 -21.50 18 RIC-seq
chrX:139865552:139865570:[+] chr3:39543730:39543748:[+] nonBSJ supported CDS

circRNA 5': AGCAAUUACUGGUCUUCCA 3'


            |||| | |::|||:|||


target  3':GUCGUCUA-GGUCAGGAGGA 5'

 -19.20 1 RIC-seq
chrX:139865553:139865570:[+] chr3:39543730:39543747:[+] nonBSJ supported CDS

circRNA 5': GCAAUUACUGGUCUUCCA 3'


            ||| | |::|||:|||


target  3':UCGUCUA-GGUCAGGAGGA 5'

 -18.10 20 RIC-seq
chrX:139865559:139865569:[+] chr3:39543757:39543767:[+] nonBSJ supported CDS

circRNA 5':ACUGGUCUUCC 3'


            |||||||||


target  3':GGACCAGAAGA 5'

 -16.00 2 RIC-seq
chrX:139866050:139866087:[+] chr3:39543721:39543749:[+] nonBSJ supported CDS

circRNA 5':CCGGAUAAUUUGGGUCUUCCUGAAAAUCUACGUCUUCC 3'


            |:| :| |: :|||:|||| |||||


target  3':CGUC-GUCUAGGUCAGGAGGAGAA--------AGAAGA 5'

 -20.80 26 RIC-seq
chrX:139866225:139866246:[+] chr3:39543744:39543764:[+] nonBSJ supported CDS

circRNA 5':UGUCUUCCAGCAAGUCCACGUC 3'


            |||||| ||| |: || |:


target  3':CCAGAAGACCGUCCGCGU-CGU 5'

 -14.10 23 RIC-seq
chrX:139866507:139866542:[+] chr3:39543696:39543743:[+] nonBSJ supported CDS

circRNA 5':AAUCCACGUCUUCCAACCA--------------AGCCAUGUCUUCCAGAA 3'


            ||||| |||:||| |||| |||| ||||


target  3':CUAGGU-CAGGAGGAGAAAGAAGACCAUCUUCGUCGGCG-AGAAUGUCUA 5'

 -27.40 1 RIC-seq
chrX:139866507:139866575:[+] chr3:39543680:39543743:[+] nonBSJ supported CDS

circRNA 5':AAUCCACGUCUUCCAACCAAGCCAUGUCUUCC---AGAAAAU-CCACGUCUUCCAGAAAAUAUAUGUCU--UCCA 3'


            ||||| |||:||| ||||| |||| || | |||| |||| ||| ||: |||


target  3':CUAGGU-CAGGAGGAGAA--------AGAAGACCAUCUUCGUCGGCG-AGAAUGUCUACGACAUAAAGGCUAGG 5'

 -33.20 8 RIC-seq
chrX:139866507:139866575:[+] chr3:39543684:39543743:[+] nonBSJ supported CDS

circRNA 5':AAUCCACGUCUUCCAACCAAGCCAUGUCUUCC---AGAAAAU-CCACGUCUUCCAGAAAAUAUAUGUC-UUCCA 3'


            ||||| |||:||| ||||| |||| || | |||| |||| ||| ||||


target  3':CUAGGU-CAGGAGGAGAA--------AGAAGACCAUCUUCGUCGGCG-AGAAUGUCUACG----ACAUAAAGGC 5'

 -31.90 1 RIC-seq
chrX:139866507:139866579:[+] chr3:39543677:39543743:[+] nonBSJ supported CDS

circRNA 5':AAUCCACGUCUUCCAACCAAGCCAUGUCUUCC---AGAAAAU-CCACGUCUUCCAGAAAAUAUAUGUCU--UCCAACUA 3'


            ||||| |||:||| ||||| |||| || | |||| |||| ||| ||: ||| |||


target  3':CUAGGU-CAGGAGGAGAA--------AGAAGACCAUCUUCGUCGGCG-AGAAUGUCUACGACAUAAAGGCUAGG-UGA 5'

 -34.30 8 RIC-seq
chrX:139866509:139866575:[+] chr3:39543680:39543742:[+] nonBSJ supported CDS

circRNA 5': UCCACGUCUUCCAACCAAGCCAUGUCUUCC---AGAAAAU-CCACGUCUUCCAGAAAAUAUAUGUCU--UCCA 3'


            |||| |||:||| ||||| |||| || | |||| |||| ||| ||: |||


target  3':UAGGU-CAGGAGGAGAA--------AGAAGACCAUCUUCGUCGGCG-AGAAUGUCUACGACAUAAAGGCUAGG 5'

 -32.00 1 RIC-seq
chrX:139866510:139866579:[+] chr3:39543677:39543741:[+] nonBSJ supported CDS

circRNA 5': CCACGUCUUCCAACCAAGCCAUGUCUUCC---AGAAAAU-CCACGUCUUCCAGAAAAUAUAUGUCU--UCCAACUA 3'


            ||| |||:||| ||||| |||| || | |||| |||| ||| ||: ||| |||


target  3':AGGU-CAGGAGGAGAA--------AGAAGACCAUCUUCGUCGGCG-AGAAUGUCUACGACAUAAAGGCUAGG-UGA 5'

 -31.70 1 RIC-seq
chrX:139866513:139866575:[+] chr3:39543680:39543738:[+] nonBSJ supported CDS

circRNA 5':CGUCUUCCAACCAAGCCAUGUCUUCC---AGAAAAU-CCACGUCUUCCAGAAAAUAUAUGUCU--UCCA 3'


            |||:||| ||||| |||| || | |||| |||| ||| ||: |||


target  3':UCAGGAGGAGAA--------AGAAGACCAUCUUCGUCGGCG-AGAAUGUCUACGACAUAAAGGCUAGG 5'

 -27.20 1 RIC-seq
chrX:139866527:139866579:[+] chr3:39543677:39543741:[+] nonBSJ supported CDS

circRNA 5':GCCAUGUCUUCC-------------AGAAAAU-CCACGUCUUCCAGAAAAUAUAUGUCU--UCCAACUA 3'


            ||| |||:||| |||| || | |||| |||| ||| ||: ||| |||


target  3':AGGU-CAGGAGGAGAAAGAAGACCAUCUUCGUCGGCG-AGAAUGUCUACGACAUAAAGGCUAGG-UGA 5'

 -28.80 1 RIC-seq
chrX:139866543:139866588:[+] chr3:39543705:39543743:[+] nonBSJ supported CDS

circRNA 5':AAUCCACGUCUUCCAGAAAAUAUAUGUCUUCCAACU-AAGCUA-CGUC 3'


            ||||| |||:||| ||||| |||| ||:


target  3':CUAGGU-CAGGAGGAGAA--------AGAAGACCAUCUUCGUCGGCGA 5'

 -24.70 1 RIC-seq
chrX:139866729:139866791:[+] chr3:39554881:39554925:[+] nonBSJ supported CDS

circRNA 5':CAGUCUUCCAUCAACUGGCUCAAUAUCCAUGUCUUCCAACGUCUCCAGUGUGCUGAUCUUCUG 3'


            | ||:||| ||| ||| ||||| || |||||||||:


target  3': UGAGGAGGA-----ACC-AGUGA-------AGAAGAAACCCCA----ACCGGACUAGAAGGA 5'

 -26.60 19 RIC-seq
chrX:139866743:139866791:[+] chr3:39554881:39554917:[+] nonBSJ supported CDS

circRNA 5':CUGGCUCAAUAUCCAUGUCUUCCAACGUCUCCAGUGUGCUGAUCUUCUG 3'


            ||| ||| ||||| || |||||||||:


target  3':AACC-AGUGA-------AGAAGAAACCCCA----ACCGGACUAGAAGGA 5'

 -21.60 19 RIC-seq
chrX:139865690:139865714:[+] chr3:39569504:39569527:[+] nonBSJ supported Exon

circRNA 5':GUGUCUUCCACCAAAUC-CAAGUCUU 3'


            |||| |||||||| |||||||


target  3':AACAGUA--UGGUUUAGUGUUCAGAU 5'

 -23.80 27 RIC-seq
chrX:139865763:139865793:[+] chr3:39567330:39567372:[+] nonBSJ supported Exon

circRNA 5':GUGUCUUCCAGAA-----------AGAAAUCCA-GGUCUUCCA 3'


            ||:||| ||| |:||| |||||:||


target  3':GACGGAAAUAUAACCUUAAAGAUGUCUCUGGGUACCAGAGGGG 5'

 -25.20 2 RIC-seq
chrX:139865765:139865793:[+] chr3:39567330:39567354:[+] nonBSJ supported Exon

circRNA 5':GUCUUCCAGAAAGAAAUCCA-GGUCUUCCA 3'


            ||| |||| |:||| |||||:||


target  3':AAGAU-GUCUC----UGGGUACCAGAGGGG 5'

 -23.40 3 RIC-seq
chrX:139866125:139866155:[+] chr3:39567755:39567782:[+] nonBSJ supported Exon

circRNA 5':AUGGCCUCCAGGUCUUCCAGACUAUC--CAUGU 3'


            ||| || :||| :||| ||||


target  3':GACCCGAUUA-UAGA----UUGAAAAACGUACU 5'

 -8.60 26 RIC-seq
chrX:139866142:139866175:[+] chr3:39567366:39567396:[+] nonBSJ supported Exon

circRNA 5':CAGACUAUCCAUGUCUUCCAGAAAAUCCUUGUCU 3'


            |||| ||||||: ||:| |||:||:||


target  3':UUCUG--AGGUACGUCA-GUUUAA-AGGGACGGAA 5'

 -25.90 1 RIC-seq
chrX:139866142:139866176:[+] chr3:39567365:39567396:[+] nonBSJ supported Exon

circRNA 5':CAGACUAUCCAUGUCUUCCAGAAAAUCCUUGUCUU 3'


            |||| ||||||: ||:| |||:||:|||


target  3':UUCUG--AGGUACGUCA-GUUUAA-AGGGACGGAAA 5'

 -26.80 5 RIC-seq
chrX:139866151:139866216:[+] chr3:39567715:39567775:[+] nonBSJ supported Exon

circRNA 5':CAUGUCUUCCAGAAAAUCCUUGUCUUCCCUUAAAUCUAUAGCUUCCAAAAAAUCCGG-GUC-UUCCAG 3'


            ||:||| || |||| :||: || |||: :|| |||||


target  3':UUAUAGAUUGAAAAACGU--ACUUAAUUAUACGU-GAUA-UGAGAGUGG---AGGUGUUAGUAAGGUA 5'

 -18.90 9 RIC-seq
chrX:139866172:139866195:[+] chr3:39567763:39567783:[+] nonBSJ supported Exon

circRNA 5':GUCUUCCCUUAAAUCUAUAGCUUC 3'


            ||| || ||||| :|||


target  3': AGACCCGAUUAUAGAU--UGAAA 5'

 -5.50 1 RIC-seq
chrX:139866185:139866216:[+] chr3:39567715:39567744:[+] nonBSJ supported Exon

circRNA 5':UCUAUAGCUUCCAAAAAAUCCGG-GUC-UUCCAG 3'


            |||| :||: || |||: :|| |||||


target  3':UGAUA-UGAGAGUGG---AGGUGUUAGUAAGGUA 5'

 -17.20 12 RIC-seq
chrX:139866268:139866302:[+] chr3:39567365:39567396:[+] nonBSJ supported Exon

circRNA 5':CAGACUAUCCAUGUCUUCCAGAAAAUCCUUGUCUU 3'


            |||| ||||||: ||:| |||:||:|||


target  3':UUCUG--AGGUACGUCA-GUUUAA-AGGGACGGAAA 5'

 -26.80 6 RIC-seq
chrX:139866268:139866303:[+] chr3:39567366:39567396:[+] nonBSJ supported Exon

circRNA 5':CAGACUAUCCAUGUCUUCCAGAAAAUCCUUGUCUUC 3'


            |||| ||||||: ||:| |||:||:|||


target  3':UUCUG--AGGUACGUCA-GUUUAA-AGGGACGGAA 5'

 -26.60 13 RIC-seq
chrX:139866637:139866672:[+] chr3:39567639:39567681:[+] nonBSJ supported Exon

circRNA 5':CAGGGCUUCCAGCAUCUGCUC---GUCUU------CCAACAUCUC 3'


            ||:|| |||||| ::|| |:|| |||| ||||


target  3':CUCUCG--GGUCGUUCGUGAUACCCGGACCGAAACGGUUUUAGAU 5'

 -23.20 1 RIC-seq
chrX:139866679:139866708:[+] chr3:39567639:39567677:[+] nonBSJ supported Exon

circRNA 5':UUCCAGCAU-CUCUGUGU-CUU-------CCAGCAUCUU 3'


            ||||||| | ||:|| |:| |||: ||||


target  3':CGGGUCGUUCGUGAUACCCGGACCGAAACGGUUUUAGAU 5'

 -20.10 17 RIC-seq
chrX:139866757:139866822:[+] chr3:39569400:39569468:[+] nonBSJ supported Exon

circRNA 5': AUGUCUUC-CAACG-UCU---CCAGUGUGCUGA-UC-UUCUGACAUUCAGGUCUUCCAGUGUCUGCAAUAUCC 3'


            ||:||||| | ||| || || ||| | :| |:|||| |:: ||: || |||||| ||| ||||


target  3':GUAUAGAAGAGAAGAAAGAACUGG-CAGUCGAGUCGGUAGGACUUUGG--CCGAAAUGUCACA--CGUC-UAGGG 5'

 -37.30 1 RIC-seq
chrX:139866757:139866823:[+] chr3:39569400:39569468:[+] nonBSJ supported Exon

circRNA 5': AUGUCUUC-CAACG-UCU---CCAGUGUGCUGA-UC-UUCUGACAUUCAGGUCUUCCAGUGUCUGCAAUAUCCA 3'


            ||:||||| | ||| || || ||| | :| |:|||| |:: ||: || |||||| ||| ||||


target  3':GUAUAGAAGAGAAGAAAGAACUGG-CAGUCGAGUCGGUAGGACUUUGG--CCGAAAUGUCACA--CGUC-UAGGG 5'

 -38.70 17 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr3:39554881:39554917:[+] target - chr3:39554900-39554901 C>T BTCA-JP|LINC-JP ICGC
chr3:39554881:39554925:[+] target - chr3:39554900-39554901 C>T BTCA-JP|LINC-JP ICGC
chr3:39566101:39566149:[+] target - chr3:39566132-39566133 G>T PRAD-CA ICGC
chr3:39566119:39566140:[+] target - chr3:39566132-39566133 G>T PRAD-CA ICGC
chrX:139866757:139866822:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866757:139866823:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC