Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866628:139866685:[+] chr4:185309680:185309725:[-] nonBSJ supported 3UTR

circRNA 5':CAGCAUCUCCAGGGCU-UCCAGCAUCUGCUCGUCUUCCAACAUCUCCACGUCUUCCAGC 3'


            ||| || ||| ||||||| |||| |||| ||||||| |||:


target  3':AUCG----GGACCCUCUAGGUCGUC--CGAGAUCU---UUGU----GUGCAGAUGGUUA 5'

 -39.70 1 RIC-seq
chrX:139866634:139866685:[+] chr4:185309682:185309725:[-] nonBSJ supported 3UTR

circRNA 5':CUCCAGGGCU-UCCAGCAUCUGCUCGUCUUCCAACAUCUCCACGUCUUCCAGC 3'


            ||| ||| ||||||| |||| |||| ||||||| |||:


target  3':CGGGACCCUCUAGGUCGUC--CGAGAUCU---UUGU----GUGCAGAUGGUUA 5'

 -39.20 1 RIC-seq