Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866292:139866323:[+] chr17:40152560:40152589:[-] nonBSJ supported 5UTR

circRNA 5':AUCCUUGUCUUCCCUCAAAUCCAUAGCUUCCG 3'


            ||||||| ||| ||||||


target  3':AAGGAACA--AGGAACUUUCAGAGACGAAGGG 5'

 -21.30 1 RIC-seq
chrX:139865936:139865965:[+] chr17:40146886:40146913:[-] nonBSJ supported CDS

circRNA 5':GUCUUCCUGAAGAUCCACGUCUUC-CAGAAA 3'


            |||||| |||:||| || |||| ||:||


target  3':UGGAAGG-CUUUUAGA-GC-GAAGAGUUUUA 5'

 -23.30 22 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866292:139866323:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC