Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866624:139866649:[+] chr6:56918495:56918522:[+] nonBSJ supported CDS

circRNA 5':CUUCCAGCAUCUCCAGGGCU--UCCAGC 3'


            ||| |:|| :||| |||||


target  3':AAAGAUUGUUAAAACAUCGAUGAGGUCU 5'

 -15.00 1 RIC-seq
chrX:139866624:139866650:[+] chr6:56918494:56918522:[+] nonBSJ supported CDS

circRNA 5':CUUCCAGCAUCUCCAGGGCU--UCCAG-CA 3'


            ||| |:|| :||| ||||| |


target  3':AAAGAUUGUUAAAACAUCGAUGAGGUCUG 5'

 -15.80 16 RIC-seq
chrX:139866472:139866484:[+] chr6:56917645:56917657:[+] nonBSJ supported Exon

circRNA 5':AGGUAUGUCUUCC 3'


            ||: |||||


target  3':ACCGAAAAGAAGU 5'

 -9.20 9 RIC-seq
chrX:139866472:139866484:[+] chr6:56917646:56917657:[+] nonBSJ supported Exon

circRNA 5':AGGUAUGUCUUCC 3'


            ||: |||||


target  3':ACCGAAAAGAAG 5'

 -9.20 1 RIC-seq
chrX:139866743:139866785:[+] chr6:56917620:56917658:[+] nonBSJ supported Exon

circRNA 5':CUGGCUCAAUAUCCAUGUCUUCCAACGUCUCCAGUGUGCU-GAU 3'


            ||||| || ||| || ||:|:|:|| ||


target  3':UACCGAAAAGAAGUUACUAACCAA--CAA--GUUAUAUGAGCU 5'

 -16.10 2 RIC-seq