Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865456:139865490:[+] chr8:27516393:27516420:[+] nonBSJ supported CDS

circRNA 5':AUCUUCCAGACAAUCCA-UGUCUUCCGGACAAUCCA 3'


            |||:| || ||||||||| ||||


target  3': AGAGG-------AGCAGACAGAAGGCGACCUAGGG 5'

 -22.10 3 RIC-seq
chrX:139865456:139865494:[+] chr8:27516391:27516419:[+] nonBSJ supported CDS

circRNA 5':AUCUUCCAGACAAUCCAUGUCUUCCGGACAAUCCAUGUC 3'


            ||:|| ||||||||| |||| :||


target  3':GAGGAGCAG--------ACAGAAGGCGACCUAGG-GCA 5'

 -22.20 2 RIC-seq
chrX:139865456:139865494:[+] chr8:27516391:27516420:[+] nonBSJ supported CDS

circRNA 5':AUCUUCCAGACAAUCCA-UGUCUUCCGGACAAUCCAUGUC 3'


            |||:| || ||||||||| |||| :||


target  3': AGAGG-------AGCAGACAGAAGGCGACCUAGG-GCA 5'

 -22.20 25 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr8:27516391:27516419:[+] target - chr8:27516399-27516400 C>A LICA-CN ICGC
chr8:27516391:27516420:[+] target - chr8:27516399-27516400 C>A LICA-CN ICGC
chr8:27516393:27516420:[+] target - chr8:27516399-27516400 C>A LICA-CN ICGC