Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865503:139865539:[+] chr16:2820869:2820920:[+] nonBSJ supported 3UTR

circRNA 5':AGCUCCAAGUC-UUCCAGUAAAUCA----------AGUCUUCCA---GCAA 3'


            ||||| || :||||| |:||::||| :|||


target  3':GUGAGGAACACCGAGGUCUCGUAACCCACACCACCUUAGGGGGUUUCUGUUA 5'

 -22.40 1 RIC-seq
chrX:139865532:139865564:[+] chr16:2817944:2817993:[+] nonBSJ supported CDS

circRNA 5':UCCAGCAAAU-------------CCAGUCUUCCAGCAAUU----ACUGGU 3'


            |||||| ||| | ::|||| ||||:


target  3':UGGUCGUCUCCUGCACCAGCAACGGUGACGGGGUCUCCUUUCCCUGACUC 5'

 -18.60 1 RIC-seq
chrX:139865549:139865571:[+] chr16:2817966:2817993:[+] nonBSJ supported CDS

circRNA 5':UCCAGCAAUU-AC-UGGUC-UU-CCAC 3'


            |||||| || ||||| || ||||


target  3':UGGUCGUCUCCUGCACCAGCAACGGUGA 5'

 -21.60 1 RIC-seq
chrX:139865716:139865758:[+] chr16:2811823:2811862:[+] nonBSJ supported CDS

circRNA 5':CAGUAAAUCUAGUUCUUCCAGAAAAAUCU-----AGAUCUUCCA-GUCA 3'


            ||:| ||| ||| ||| ||| || || |:|


target  3':CUCGUCCAAAUCCUGAA---------AGACCCCUUCUCGACCGUACGGC 5'

 -7.20 1 RIC-seq
chrX:139865653:139865666:[+] chr16:2814613:2814629:[+] nonBSJ supported Intron

circRNA 5':AGAUCU---UCCAGCUA 3'


            ||||| |||||||


target  3':CCUAGACAAAGGUCGAC 5'

 -16.40 2 RIC-seq
chrX:139865755:139865786:[+] chr16:2814562:2814602:[+] nonBSJ supported Intron

circRNA 5': GUCAA-UCAGUGUCUUC--------CAGAAAGAAAUCCAGG 3'


            ||| |||: :||||| ||||| :||||||||


target  3':CCAGGUAAGUU-UAGAAGAAAUUGGAGUCUUCUUUUAGGUCA 5'

 -26.10 1 RIC-seq
chrX:139865794:139865825:[+] chr16:2814562:2814602:[+] nonBSJ supported Intron

circRNA 5': GUCAA-UCAGUGUCUUC--------CAGAAAGAAAUCCAGG 3'


            ||| |||: :||||| ||||| :||||||||


target  3':CCAGGUAAGUU-UAGAAGAAAUUGGAGUCUUCUUUUAGGUCA 5'

 -26.10 1 RIC-seq
chrX:139866184:139866237:[+] chr16:2814365:2814420:[+] nonBSJ supported Intron

circRNA 5':AUCUAUAGCUUCCAAAAAAUCC-------GGGUCUUC-CAGGAAAUCCGUGUCUUCCA-GCAA 3'


            ||||: ||||||||| || || || ||| ||:|| ||| :||


target  3':AAGAUGACGAAGGUUUCUUCGGACACUGACCGAGACUAGUUCU-------CAGUUUCUGUGUC 5'

 -29.10 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr16:2817944:2817993:[+] target - chr16:2817972-2817973 A>G LINC-JP ICGC
chr16:2817966:2817993:[+] target - chr16:2817972-2817973 A>G LINC-JP ICGC
chr16:2820869:2820920:[+] target - chr16:2820882-2820883 G>T LAML-KR|LICA-CN ICGC