Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865635:139865666:[+] chr16:2816711:2816741:[+] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAUCAAAUACAGAUCUUCCAGCUA 3'


            |:|||| |::| ||||


target  3': CUAGAACAAUUCCUGGCAAAUGGGGCUCGAC 5'

 -11.40 11 RIC-seq
chrX:139865934:139865959:[+] chr16:2815456:2815487:[+] nonBSJ supported CDS

circRNA 5':AUGUCUUCCU------GAAGAUCCAC-GUCUUC 3'


            || |||||| |||| || | |:|||


target  3':GAC-GAAGGAAGUCCUCUUCCCGGAGACGGAAA 5'

 -16.40 2 RIC-seq
chrX:139865942:139865951:[+] chr16:2815747:2815755:[+] nonBSJ supported CDS

circRNA 5':CUGAAGAUCC 3'


            ||||||:|


target  3': ACUUCUGGA 5'

 -9.30 1 RIC-seq
chrX:139865950:139865980:[+] chr16:2820197:2820218:[+] nonBSJ supported Intron

circRNA 5':CCACGUCUUCCAGAAAAUCCAUGUCUUCCAG 3'


            ||| || :||| ||| |:|: ||


target  3':AGUG-AGUGGGU-----AGG--CGGGC-GUG 5'

 -12.70 16 RIC-seq