Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865710:139865736:[+] chr16:2258224:2258253:[+] nonBSJ supported CDS

circRNA 5': GUCUUCCAGUAAAUCUAGUUC--UUCCAG 3'


            ||| |||:| :|: ||: ||||||


target  3':GCAGU-GGUUACGGGGGGCAGUCUAAGGUCU 5'

 -18.80 25 RIC-seq
chrX:139865710:139865738:[+] chr16:2258223:2258253:[+] nonBSJ supported CDS

circRNA 5': GUCUUCCAGUAAAUCUAGUUC--UUCCAGAA 3'


            ||| |||:| :|: ||: |||||||


target  3':GCAGU-GGUUACGGGGGGCAGUCUAAGGUCUG 5'

 -21.40 1 RIC-seq
chrX:139865711:139865736:[+] chr16:2258224:2258257:[+] nonBSJ supported CDS

circRNA 5': UCUU----CCAGUAAAUCUAGUUC--UUCCAG 3'


            |||: |||:| :|: ||: ||||||


target  3':UGGAGCAGUGGUUACGGGGGGCAGUCUAAGGUCU 5'

 -14.90 2 RIC-seq
chrX:139865714:139865736:[+] chr16:2258224:2258249:[+] nonBSJ supported CDS

circRNA 5':UCCAGUAAAUCUAGUUC--UUCCAG 3'


            |||:| :|: ||: ||||||


target  3':UGGUUACGGGGGGCAGUCUAAGGUCU 5'

 -14.70 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr16:2258223:2258253:[+] target - chr16:2258237-2258238 G>T LICA-CN ICGC
chr16:2258224:2258249:[+] target - chr16:2258237-2258238 G>T LICA-CN ICGC
chr16:2258224:2258253:[+] target - chr16:2258237-2258238 G>T LICA-CN ICGC
chr16:2258224:2258257:[+] target - chr16:2258237-2258238 G>T LICA-CN ICGC