Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866225:139866245:[+] chr17:715729:715751:[-] nonBSJ supported Intron

circRNA 5': UGUCUUCCAGC-AAG-UCCACGU 3'


            |||| :|||| ||| :||||:


target  3':UGCAG-GGGUCUCUUCGGGGUGUC 5'

 -18.80 1 RIC-seq
chrX:139866269:139866298:[+] chr17:715685:715715:[-] nonBSJ supported Intron

circRNA 5':AGACU---AUCCAUGUCUUCCAGAAAAUCCUUG 3'


            |||| |:|| | |||| ||:


target  3':CCUGACUCUGGGGUCCCGU-GUCUGUCU-GAGU 5'

 -10.50 1 RIC-seq
chrX:139866567:139866594:[+] chr17:781945:781969:[-] nonBSJ supported Intron

circRNA 5':UGUCUUCCAACUAAGCUACGUCUUCCAA 3'


            || ::|||||: :|||


target  3':UCACGGGGUUGGACUAACUU---GGGUC 5'

 -11.60 2 RIC-seq
chrX:139866587:139866611:[+] chr17:812843:812872:[-] nonBSJ supported Intron

circRNA 5': UCUUC-CA-ACA--AAUCCAUGUCUUCCU 3'


            |||:| | || ||:| ||:||:||


target  3':UAGAGGCGAGUGACGUUGGAGACGGAGGGC 5'

 -18.90 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866567:139866594:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC
chrX:139866587:139866611:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC