Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865984:139866035:[+] chr19:3981367:3981421:[-] nonBSJ supported CDS

circRNA 5':AUCCAUGUCUUCCAGUAACCUC-CCAG--UCUUC--CAGAAAAUCCACGUCUUCCCA 3'


            ||| :|: |||||| |||| |||: ||| ||||:| |


target  3':CAGGAGCGACAGGUCAAACUACAGGUCAAAGAGAUAGUCAAAACGA--CAGAGGAGA 5'

 -28.10 2 RIC-seq
chrX:139866491:139866518:[+] chr19:3977966:3977993:[-] nonBSJ supported CDS

circRNA 5':GGUACGUCUU--CCAGAAAAUCCACGUCUU 3'


            |||| |||: |||| | ||:|:


target  3':GCAUGAAGAGCCGGUCCAUC--GCGCGGGC 5'

 -17.30 1 RIC-seq
chrX:139866566:139866593:[+] chr19:3977917:3977964:[-] nonBSJ supported CDS

circRNA 5':AUGUCU--UCCAA-------------------CUAAGCUACGUCUUCCA 3'


            |||| :|||| || |||:|||||:: |


target  3':GGCAGCCCGGGUUUCGUGGUCUAGAACGCCCGGAGUCGGUGCAGGGUG 5'

 -21.80 1 RIC-seq
chrX:139866620:139866645:[+] chr19:3982932:3982964:[-] nonBSJ supported CDS

circRNA 5':AGGUCU-UC-----CAGCAUCUCCA-GGGCUUC 3'


            ||||: || || |||| || :|||||


target  3':GCCAGGUAGAACAAGUAGUAGUCGUGUCCGAAC 5'

 -19.50 2 RIC-seq
chrX:139866407:139866434:[+] chr19:3976309:3976333:[-] nonBSJ supported Intron

circRNA 5':UCUUCCAGCCUACUUGUGUCUUCCAACA 3'


            | || |||:| ||: ||| || ||


target  3':GGCUGGCCGGGU-AAUUCAG--GGAUGA 5'

 -15.30 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr19:3976309:3976333:[-] target - chr19:3976321-3976322 T>G LAML-KR ICGC
chr19:3977966:3977993:[-] target - chr19:3977979-3977980 C>A LINC-JP ICGC
chrX:139866566:139866593:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC