Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866672:139866703:[+] chr19:36729237:36729269:[+] nonBSJ supported 3UTR

circRNA 5':CCAC-GUCUUCCAGCAUCUCUGUGU-CUUCCAGC 3'


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target  3': GUGAUAGUUCUCAAACCAGACAUAGGAAGGUUA 5'

 -19.80 19 RIC-seq
chrX:139866676:139866703:[+] chr19:36729237:36729266:[+] nonBSJ supported 3UTR

circRNA 5': GUCUUCCAGCAUCUCUGUGU-CUUCCAGC 3'


            ||| |||||:| ||||||:


target  3':AUAGUUCUCAAACCAGACAUAGGAAGGUUA 5'

 -17.80 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr19:36729237:36729266:[+] target - chr19:36729260-36729261 C>G PACA-CA ICGC
chr19:36729237:36729269:[+] target - chr19:36729260-36729261 C>G PACA-CA ICGC