Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866334:139866363:[+] chr19:23544048:23544078:[-] nonBSJ supported CDS

circRNA 5':GUCUUC-CAGGAAAUCCGUGUC-UUCCAGCAA 3'


            ||||| || || || ||||||||


target  3': AGAAGUGUAAACAUCUCAAAGAAAGGUCGUA 5'

 -19.90 7 RIC-seq
chrX:139866335:139866363:[+] chr19:23544049:23544078:[-] nonBSJ supported CDS

circRNA 5':UCUUC-CAGGAAAUCCGUGUC-UUCCAGCAA 3'


            |||| || || || ||||||||


target  3': GAAGUGUAAACAUCUCAAAGAAAGGUCGUA 5'

 -17.90 11 RIC-seq
chrX:139866336:139866363:[+] chr19:23544050:23544078:[-] nonBSJ supported CDS

circRNA 5':CUUC-CAGGAAAUCCGUGUC-UUCCAGCAA 3'


            ||| || || || ||||||||


target  3': AAGUGUAAACAUCUCAAAGAAAGGUCGUA 5'

 -15.30 1 RIC-seq
chrX:139866471:139866501:[+] chr19:23545235:23545260:[-] nonBSJ supported CDS

circRNA 5':AAGGUAUGUC-UUCCAACAAAGGUACGUCUUC 3'


            |:|:|| || |||| :||| |||||


target  3':CUUCGUAAAGAAAGG------UCAUACAGAAU 5'

 -15.90 2 RIC-seq
chrX:139866723:139866748:[+] chr19:23543815:23543846:[-] nonBSJ supported CDS

circRNA 5':ACUACCCAG-------UCUUCCAUCAACUGGCU 3'


            || |||| |||: |:||


target  3':AGAGAGGUCAUACUUAAGAGAAUACAA-AUCGU 5'

 -9.20 1 RIC-seq
chrX:139866723:139866749:[+] chr19:23543815:23543853:[-] nonBSJ supported CDS

circRNA 5':ACUACCCAGUCUUCCAU-------------CAACUGGCUC 3'


            || ||||| ||| ||||


target  3':AGAGAGGUCAUACUUAAGAGAAUACAAAUCGUUC-CCGAC 5'

 -9.50 15 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr19:23545235:23545260:[-] target - chr19:23545254-23545255 T>A LINC-JP ICGC