Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865562:139865609:[+] chr19:23541634:23541682:[-] nonBSJ supported 3UTR

circRNA 5':GGUCUUCCACCAAAUCCAGAUCUUCCAGGAAAAUCCACG-UCU-UCCAGG 3'


            ||| || ||||| |||| ||| |||||


target  3':ACAGUUUUCGCAACC-GUGUAGAAAGUCCAAACAUCUCAAAGAGAGGUCA 5'

 -23.40 1 RIC-seq
chrX:139865580:139865609:[+] chr19:23541652:23541682:[-] nonBSJ supported 3UTR

circRNA 5':GAUCUUCCAGGAAAAUCCACG-UCU-UCCAGG 3'


            ||||| |||| ||| |||||


target  3': UAGAAAGUCCAAACAUCUCAAAGAGAGGUCA 5'

 -17.90 1 RIC-seq
chrX:139866769:139866805:[+] chr19:23541675:23541719:[-] nonBSJ supported 3UTR

circRNA 5':GUCUCCAGUGUGC-UGAUCU----UCUGAC----AUUCAGGUCUUC 3'


            ||||||||:|| |:|| |||| ||||||| |||


target  3': AGAGGUCAUACUUAUUAUAAUACAGACAAUUCUUAAGUCCUGAAA 5'

 -27.90 1 RIC-seq
chrX:139865967:139865997:[+] chr19:23544125:23544157:[-] nonBSJ supported CDS

circRNA 5':UCCAUG-UCUUC-CAGAAAAUCCAUGUCUUCCA 3'


            |||:: |||| || |||: |


target  3':CGGUGUAAGAAAUGUAAACAUCCCAAAGAGAGA 5'

 -8.10 1 RIC-seq
chrX:139865970:139865989:[+] chr19:23544194:23544212:[-] nonBSJ supported CDS

circRNA 5':AUGUCUUCCAGAAAAUCCAU 3'


            ||||| || |||


target  3':AACAGAUUUUCGAAACGGU 5'

 -8.10 1 RIC-seq
chrX:139866388:139866416:[+] chr19:23543207:23543237:[-] nonBSJ supported CDS

circRNA 5':GUCUUC-CAUCAAAUUAAUGUCU-UCCAGCC 3'


            ||:|| ||| ||| ||||||


target  3':AAGGAGUGUAAACAUCUCAAAGAGAGGUCGU 5'

 -18.20 2 RIC-seq
chrX:139866513:139866533:[+] chr19:23543922:23543947:[-] nonBSJ supported CDS

circRNA 5':CGUCUUCCAACCAA-----GCCAUGU 3'


            |||||| :||||:


target  3':ACAGAAGAAUCCCAACUCCUGGUAUC 5'

 -10.80 2 RIC-seq
chrX:139866587:139866609:[+] chr19:23542806:23542829:[-] nonBSJ supported CDS

circRNA 5': UCU-UCCAACAAAUCCAUGUCUUC 3'


            ||| |||| |:||||


target  3':AAGAGAGGUCAUACUUA-AUAGAAU 5'

 -8.30 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866587:139866609:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC
chrX:139866769:139866805:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC