Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866638:139866656:[+] chr16:19869128:19869146:[-] nonBSJ supported 3UTR

circRNA 5':AGGGCUUCCAGCAUCUGCU 3'


            ||: |:|| |||


target  3':ACCUUAGGGACCUCUACGU 5'

 -9.70 1 RIC-seq
chrX:139866317:139866350:[+] chr16:19870715:19870739:[-] nonBSJ supported Intron

circRNA 5':GCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCG 3'


            |:|||:|| :|: ||:||||:||


target  3':GGGAGGUUU-------UCGUU--GUUCUUUGGGA 5'

 -21.00 1 RIC-seq
chrX:139866317:139866358:[+] chr16:19870715:19870748:[-] nonBSJ supported Intron

circRNA 5':GCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCC--GUGUCUUCC 3'


            |:|||:|| :|: ||:||||:|| :||| ||


target  3':GGGAGGUUU-------UCGUU--GUUCUUUGGGAGUACACUAG 5'

 -23.50 21 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866317:139866350:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866317:139866358:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC