Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866202:139866259:[+] chr9:130742391:130742440:[-] nonBSJ supported CDS

circRNA 5':AUCCGGGUCUUC--CAGGAAAUCCGUGUCUUCCAGCAAG-UCCAC--GUCUUCCAACAAAGCC 3'


            || ||||| ||:|||| ||:|| ||| || ||| |||| ||||


target  3':AAGAAGAAGAAGUAGUUCUUUCGGUAC------UCGCUCAAGGGACUCAGAC------UUCG 5'

 -27.80 24 RIC-seq
chrX:139866215:139866261:[+] chr9:130742379:130742415:[-] nonBSJ supported CDS

circRNA 5':AGGAAAUCCGUG-UCUUCCAGCAAGUCCACGUCUUC--CAACAAAGCCAU 3'


            |||| ||||| ||||| ||| |||||||


target  3':ACCUUAAACUUAAAGAAGA------------AGAAGUAGUUCUUUCGGU 5'

 -20.00 2 RIC-seq
chrX:139866215:139866262:[+] chr9:130742379:130742416:[-] nonBSJ supported CDS

circRNA 5':AGGAAAUCCGUG-UCUUCCAGCAAGUCCACGUCUUC--CAACAAAGCCAUG 3'


            |||| ||||| ||||| ||| ||||||||


target  3':ACCUUAAACUUAAAGAAGA------------AGAAGUAGUUCUUUCGGUA 5'

 -21.20 22 RIC-seq