Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865912:139865941:[+] chr15:44058175:44058204:[+] nonBSJ supported CDS

circRNA 5':AUCCAGGUCUUCCAGCCAAUAUAUGUCUUC 3'


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target  3':GAGGUCAUCAACCUUGGAAAUCGCAAGAAA 5'

 -12.60 13 RIC-seq
chrX:139865912:139865957:[+] chr15:44058160:44058204:[+] nonBSJ supported CDS

circRNA 5':AUCCAGGUCUUCCAGCCAAUAUAUGUCUUCCUGAAGAUCCACGUCU 3'


            ||||| |:|| |||| || |||||:||


target  3':GAGGUCAUCAACCUUGGAAAUCGCAAGAAAAGUAUC-AGGUGUAGU 5'

 -25.40 4 RIC-seq
chrX:139866059:139866069:[+] chr15:44058200:44058209:[+] nonBSJ supported CDS

circRNA 5':UUGGGUCUUCC 3'


            || |||:|


target  3': ACAAAGAGGU 5'

 -6.20 8 RIC-seq
chrX:139866061:139866069:[+] chr15:44058163:44058171:[+] nonBSJ supported CDS

circRNA 5':GGGUCUUCC 3'


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target  3':AUCAGGUGU 5'

 -5.40 1 RIC-seq