Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866620:139866632:[+] chr18:32720591:32720604:[+] nonBSJ supported 3UTR

circRNA 5':AGGUCUU-CCAG-CA 3'


            ||: |||: |


target  3':CUCGUCUUGGUUAG 5'

 -4.30 1 RIC-seq
chrX:139866620:139866648:[+] chr18:32720593:32720623:[+] nonBSJ supported 3UTR

circRNA 5':AGGUCUUCCAGCAUCUCCAGGGCUU--CCAG 3'


            || ||:|| |||


target  3':ACCUUUCUUUACUUCUUUUCUCGUCUUGGUU 5'

 -9.90 1 RIC-seq
chrX:139866620:139866649:[+] chr18:32720592:32720623:[+] nonBSJ supported 3UTR

circRNA 5':AGGUCUUCCAGCAUCUCCAGGGCUU--CCAGC 3'


            || ||:|| |||:


target  3':ACCUUUCUUUACUUCUUUUCUCGUCUUGGUUA 5'

 -10.10 2 RIC-seq
chrX:139866620:139866650:[+] chr18:32720591:32720623:[+] nonBSJ supported 3UTR

circRNA 5':AGGUCUUCCAGCAUCUCCAGGGCUU--CCAG-CA 3'


            || ||:|| |||: |


target  3':ACCUUUCUUUACUUCUUUUCUCGUCUUGGUUAG 5'

 -10.40 22 RIC-seq
chrX:139866315:139866357:[+] chr18:32681935:32681975:[+] nonBSJ supported CDS

circRNA 5':UAGCUUCCGA--AAAAUCCAGGUCUUCCAGGAAAUCCGUGUCUUC 3'


            |:|: || ||||||||||| ||| |||||: |||:|


target  3':UUUGGUAACUUAUUUUAGGUCCAACAGGACCUUUG----CAGGAA 5'

 -31.80 28 RIC-seq
chrX:139866324:139866357:[+] chr18:32681935:32681964:[+] nonBSJ supported CDS

circRNA 5':AAAAAUCCAGGUCUUCCAGGAAAUCCGUGUCUUC 3'


            ||||||||||| ||| |||||: |||:|


target  3':AUUUUAGGUCCAACAGGACCUUUG----CAGGAA 5'

 -30.60 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr18:32681935:32681964:[+] target 218930 chr18:32681940-32681941 C>T Developmental_disorder|Skin_creases,_congenital_symmetric_circumferential,_2 ClinVar
chr18:32681935:32681975:[+] target 218930 chr18:32681940-32681941 C>T Developmental_disorder|Skin_creases,_congenital_symmetric_circumferential,_2 ClinVar
chr18:32681935:32681975:[+] target 218928 chr18:32681967-32681968 C>T Skin_creases,_congenital_symmetric_circumferential,_2 ClinVar
chrX:139866315:139866357:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC