Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865687:139865703:[+] chr15:43816270:43816286:[+] nonBSJ supported CDS

circRNA 5':UCUGUGUCUUCCACCAA 3'


            ||||||| || ||


target  3':UGACACAGUUCGUCGUC 5'

 -11.80 28 RIC-seq
chrX:139866231:139866251:[+] chr15:43818967:43818995:[+] nonBSJ supported CDS

circRNA 5':CCAGCAAGU-------CCACGUCU--UCCA 3'


            |||||||: |||| ||| :||


target  3':AGUCGUUCGGUCGCGAGGUGGAGAUCGGG 5'

 -23.70 1 RIC-seq
chrX:139866231:139866268:[+] chr15:43818962:43818995:[+] nonBSJ supported CDS

circRNA 5':CCAGCAAGUCCACGUCUUCCAACAA-AGCCAUGUCUUCC 3'


            ||||||| ||| |: :|||| |||| :||||


target  3':AGUCGUUC-GGU-CGCGAGGUGGAGAUCGG---GGAAGA 5'

 -31.80 28 RIC-seq
chrX:139866668:139866718:[+] chr15:43814945:43814990:[+] nonBSJ supported CDS

circRNA 5':AUCUCCA-CG-UCUUCCAGCAUCUCUGUGUCUUCCAGCAUCUUCAUGUCUUCC 3'


            ||||| | :||||| |||| || |||| ||| |||| : |||:|


target  3':AAGAGGAGGAAGGAAGGAAGUAG-GA---AGAAC-UCG-AGAAA-GGAGAGGA 5'

 -32.70 58 RIC-seq
chrX:139866733:139866765:[+] chr15:43821642:43821677:[+] nonBSJ supported CDS

circRNA 5': CUUCCAUCAACUGGCUCAA--UAUCCAUGUCUUCC 3'


            ||| || |||| :|||| ||:||


target  3':GGAAACCUGUACCCCGACACAGGUAGGAAAAGGAGA 5'

 -16.50 1 RIC-seq
chrX:139866741:139866792:[+] chr15:43821640:43821684:[+] nonBSJ supported CDS

circRNA 5':AACU-GGCUCAAUAUCCAUGU--CUUCCAACGUCUCCAGUGUGCUGAUCUUCUGA 3'


            ||| |||: |||| || || |||| || ||:||||


target  3':CUGAUCCGGAAACCU-GUACCCCGA------CACAGGUAG---GAAAAGGAGACG 5'

 -22.50 18 RIC-seq