Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866672:139866705:[+] chrX:102632843:102632889:[+] nonBSJ supported 3UTR

circRNA 5':CCACGUCUUCCA----GCAUCUCUGUGUC------------UUC-CAGCAU 3'


            |||: :||| :||: :|| ||| |||||


target  3':UGUGUUCUGGGUGAACUGUG----UACCUUUAUUGUAUCCCAAGUGUCGUU 5'

 -13.70 3 RIC-seq
chrX:139866672:139866711:[+] chrX:102632834:102632889:[+] nonBSJ supported 3UTR

circRNA 5':CCACGUCUUCCA----GCAUCUCUGUGUC------------UUC-CAGCAUCU---UCAU 3'


            |||: :||| :||: :|| ||| ||||| |||


target  3':UGUGUUCUGGGUGAACUGUG----UACCUUUAUUGUAUCCCAAGUGUCGUUUGCCUAGUC 5'

 -13.80 14 RIC-seq
chrX:139865635:139865661:[+] chrX:102632443:102632484:[+] nonBSJ supported CDS

circRNA 5':AGGUCUUCCA-UCAAAUA--------------CAGAUCUUCC 3'


            |||||||| || || |||||


target  3':GCCAGAAGGAGAGGUAAGACGUAUCCGACGAGGUAGAGAAGC 5'

 -20.40 5 RIC-seq
chrX:139865635:139865662:[+] chrX:102632450:102632484:[+] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAUCAAAUACAGAUCU-----------UCCA 3'


            |||||||| || || ||| ||||


target  3':GCCAGAAGG-AGAG---GUA-AGACGUAUCCGACGAGGUA 5'

 -17.30 19 RIC-seq