Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866270:139866300:[+] chr16:80637091:80637129:[-] nonBSJ supported 3UTR

circRNA 5':GACU-AUC-CAUGUCUUC--CAGAAA-----AUCCUUGUC 3'


            ||| ||| |||| |||| |||| ||


target  3':GUGACUAGUGUACCUUCGUUGUCUGACGUCCUAGGUUCA 5'

 -12.40 1 RIC-seq
chrX:139866284:139866344:[+] chr16:80637082:80637129:[-] nonBSJ supported 3UTR

circRNA 5':UCCAGAAAAUCCUUGUCUUCCCUCAAAUC-CAU---AGCUUCCGAAAAAUCCAGGUCUUCCAGGA 3'


            |||| ||||| :|| ||| ||| ||| | || |||| ||||:|


target  3':UGGUC-UUUAGUGAC-----------UAGUGUACCUUCGUUGUCUGAC---GUCCU--AGGUUCA 5'

 -26.00 5 RIC-seq
chrX:139866284:139866344:[+] chr16:80637083:80637128:[-] nonBSJ supported 3UTR

circRNA 5':UCCAGAAAAUCCUUGUCUUCCCUCAAAUC-CAU---AGCUUCCGAAAAAUCCAGGUCUUCCAGGA 3'


            |||| ||||| :|| ||| ||| ||| | || |||| ||||:|


target  3': GGUC-UUUAGUGAC-----------UAGUGUACCUUCGUUGUCUGAC---GUCCU--AGGUUC 5'

 -25.40 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866284:139866344:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC