Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866636:139866647:[+] chr11:35760568:35760579:[+] nonBSJ supported Intron

circRNA 5':CCAGGGC-UUCCA 3'


            ||:|:| :|||


target  3':CGUUCUGUGAGG 5'

 -11.70 10 RIC-seq
chrX:139866643:139866669:[+] chr11:35760595:35760619:[+] nonBSJ supported Intron

circRNA 5':UUCCAGCAUCUGCUC-GUCUUCCAACAU 3'


            || |:|| ||| :|| ||||


target  3': AGUUUGUUGACCCUUUAGUU--UUGUC 5'

 -8.00 1 RIC-seq
chrX:139866643:139866674:[+] chr11:35760568:35760619:[+] nonBSJ supported Intron

circRNA 5':UUCCAGCAUCUGCUC-GUCUUC-CA---------------------ACAUCUCCA 3'


            || |:|| ||| :|| || ||| ||||


target  3': AGUUUGUUGACCCUUUAGUUUUGUCUUUUCUCCUUUUUUCCGUUCUGU-GAGG 5'

 -11.30 1 RIC-seq