Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866627:139866646:[+] chr15:72837181:72837196:[+] nonBSJ supported CDS

circRNA 5':CCAGCAUCUCCAGGGCUUCC 3'


            ||||| ||:|||||


target  3':AGUCGUU----UCUCGAAGA 5'

 -16.80 2 RIC-seq
chrX:139866636:139866664:[+] chr15:72837179:72837205:[+] nonBSJ supported CDS

circRNA 5':CCAGGGCUUCCAGCAUCU-GCUCGUCUUCC 3'


            || |:| ||||| ||| |||:|


target  3':UGUACUGUGAGUCGUUUCUCGA--AGAGG 5'

 -17.70 5 RIC-seq
chrX:139865715:139865744:[+] chr15:72815038:72815068:[+] nonBSJ supported Intron

circRNA 5':CCAGUAAAUCUAGU---UCUUCCAGAAAAAUCU 3'


            |||| |||: |||||||||||| ||


target  3':AGUCAGAC--AUCGAAUAGAAGGUCUUUUAAGU 5'

 -23.50 2 KARR-seq
chrX:139865710:139865744:[+] chr15:72815038:72815073:[+] nonBSJ supported Intron

circRNA 5':GUCUUC-CAGUAAAUCUAGU---UCUUCCAGAAAAAUCU 3'


            ||||| |||| |||: |||||||||||| ||


target  3': AGAAGAGUCAGAC--AUCGAAUAGAAGGUCUUUUAAGU 5'

 -29.00 1 KARR-seq