Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865504:139865543:[+] chr15:48760219:48760257:[-] nonBSJ supported CDS

circRNA 5':GCUCCAAG-UCUUCCA-GUAAAUCAAGUCUUCCAGCAAAUCC 3'


            |||||| || |:| :|| |||| ||


target  3': GAGGUUAAAGUAACGACGUCCGACAUAG-AGGUAACAGAG 5'

 -14.70 1 RIC-seq
chrX:139865504:139865549:[+] chr15:48760219:48760257:[-] nonBSJ supported CDS

circRNA 5':GCUCCAAG-UCUUCCA-GUAAAUCAAGUCUUCCAGCAAAUCCAGUCUU 3'


            |||||| || |:| :|| |||| ||||:


target  3': GAGGUUAAAGUAACGACGUCCGACAUAG-AGGUAA-------CAGAG 5'

 -15.60 1 RIC-seq
chrX:139865504:139865550:[+] chr15:48760219:48760257:[-] nonBSJ supported CDS

circRNA 5':GCUCCAAG-UCUUCCA-GUAAAUCAAGUCUUCCAGCAAAUCCAGUCUUC 3'


            |||||| || |:| :|| |||| ||||:


target  3': GAGGUUAAAGUAACGACGUCCGACAUAG-AGGUAA-------CAGAG 5'

 -15.70 53 RIC-seq
chrX:139865540:139865565:[+] chr15:48760219:48760241:[-] nonBSJ supported CDS

circRNA 5':AUCCAGUCUUCCA-GCAAUUACUGGUC 3'


            ||||:| ||| || ||:


target  3':GAGGUUA-AAGUAACGACGU---CCGA 5'

 -9.40 1 RIC-seq
chrX:139865540:139865571:[+] chr15:48760219:48760251:[-] nonBSJ supported CDS

circRNA 5':AUCCAGUCUUCCA-GCAAUUA-CUG-GUCUUCCAC 3'


            ||||:| ||| || ||| :|| ||||


target  3':GAGGUUA-AAGUAACGACGUCCGACAUAG-AGGUA 5'

 -15.90 4 RIC-seq
chrX:139865540:139865579:[+] chr15:48760219:48760258:[-] nonBSJ supported CDS

circRNA 5':AUCCAGUCUUCCA-GCAAUUA-CUG-GUCUUCCACCAAAUCCA 3'


            ||||:| ||| || ||| :|| |||| |||


target  3':GAGGUUA-AAGUAACGACGUCCGACAUAG-AGGUAACAGAGG 5'

 -20.30 1 RIC-seq
chrX:139865541:139865571:[+] chr15:48760221:48760251:[-] nonBSJ supported CDS

circRNA 5':UCCAGUCUUCCA-GCAAUUA-CUG-GUCUUCCAC 3'


            |||:| ||| || ||| :|| ||||


target  3': GGUUA-AAGUAACGACGUCCGACAUAG-AGGUA 5'

 -13.30 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr15:48760219:48760241:[-] target 857210 chr15:48760222-48760223 C>A Marfan_syndrome|Familial_thoracic_aortic_aneurysm_and_aortic_dissection ClinVar
chr15:48760219:48760241:[-] target 1806144 chr15:48760223-48760224 AAT>A Marfan_syndrome ClinVar
chr15:48760219:48760241:[-] target 684803 chr15:48760232-48760233 GC>G Marfan_syndrome ClinVar
chr15:48760219:48760241:[-] target 495613 chr15:48760240-48760241 CTG>C Marfan_Syndrome/Loeys-Dietz_Syndrome/Familial_Thoracic_Aortic_Aneurysms_and_Dissections ClinVar
chr15:48760219:48760251:[-] target 857210 chr15:48760222-48760223 C>A Marfan_syndrome|Familial_thoracic_aortic_aneurysm_and_aortic_dissection ClinVar
chr15:48760219:48760251:[-] target 1806144 chr15:48760223-48760224 AAT>A Marfan_syndrome ClinVar
chr15:48760219:48760251:[-] target 684803 chr15:48760232-48760233 GC>G Marfan_syndrome ClinVar
chr15:48760219:48760251:[-] target 495613 chr15:48760240-48760241 CTG>C Marfan_Syndrome/Loeys-Dietz_Syndrome/Familial_Thoracic_Aortic_Aneurysms_and_Dissections ClinVar
chr15:48760219:48760251:[-] target 647831 chr15:48760242-48760243 G>GT Familial_thoracic_aortic_aneurysm_and_aortic_dissection|Marfan_syndrome ClinVar
chr15:48760219:48760257:[-] target 857210 chr15:48760222-48760223 C>A Marfan_syndrome|Familial_thoracic_aortic_aneurysm_and_aortic_dissection ClinVar
chr15:48760219:48760257:[-] target 1806144 chr15:48760223-48760224 AAT>A Marfan_syndrome ClinVar
chr15:48760219:48760257:[-] target 684803 chr15:48760232-48760233 GC>G Marfan_syndrome ClinVar
chr15:48760219:48760257:[-] target 495613 chr15:48760240-48760241 CTG>C Marfan_Syndrome/Loeys-Dietz_Syndrome/Familial_Thoracic_Aortic_Aneurysms_and_Dissections ClinVar
chr15:48760219:48760257:[-] target 647831 chr15:48760242-48760243 G>GT Familial_thoracic_aortic_aneurysm_and_aortic_dissection|Marfan_syndrome ClinVar
chr15:48760219:48760257:[-] target 978312 chr15:48760252-48760253 TG>T Marfan_syndrome ClinVar
chr15:48760219:48760257:[-] target 966281 chr15:48760256-48760257 TC>GAATGGAGATTAT Marfan_syndrome|Familial_thoracic_aortic_aneurysm_and_aortic_dissection ClinVar
chr15:48760219:48760258:[-] target 857210 chr15:48760222-48760223 C>A Marfan_syndrome|Familial_thoracic_aortic_aneurysm_and_aortic_dissection ClinVar
chr15:48760219:48760258:[-] target 1806144 chr15:48760223-48760224 AAT>A Marfan_syndrome ClinVar
chr15:48760219:48760258:[-] target 684803 chr15:48760232-48760233 GC>G Marfan_syndrome ClinVar
chr15:48760219:48760258:[-] target 495613 chr15:48760240-48760241 CTG>C Marfan_Syndrome/Loeys-Dietz_Syndrome/Familial_Thoracic_Aortic_Aneurysms_and_Dissections ClinVar
chr15:48760219:48760258:[-] target 647831 chr15:48760242-48760243 G>GT Familial_thoracic_aortic_aneurysm_and_aortic_dissection|Marfan_syndrome ClinVar
chr15:48760219:48760258:[-] target 978312 chr15:48760252-48760253 TG>T Marfan_syndrome ClinVar
chr15:48760219:48760258:[-] target 966281 chr15:48760256-48760257 TC>GAATGGAGATTAT Marfan_syndrome|Familial_thoracic_aortic_aneurysm_and_aortic_dissection ClinVar
chr15:48760221:48760251:[-] target 857210 chr15:48760222-48760223 C>A Marfan_syndrome|Familial_thoracic_aortic_aneurysm_and_aortic_dissection ClinVar
chr15:48760221:48760251:[-] target 1806144 chr15:48760223-48760224 AAT>A Marfan_syndrome ClinVar
chr15:48760221:48760251:[-] target 684803 chr15:48760232-48760233 GC>G Marfan_syndrome ClinVar
chr15:48760221:48760251:[-] target 495613 chr15:48760240-48760241 CTG>C Marfan_Syndrome/Loeys-Dietz_Syndrome/Familial_Thoracic_Aortic_Aneurysms_and_Dissections ClinVar
chr15:48760221:48760251:[-] target 647831 chr15:48760242-48760243 G>GT Familial_thoracic_aortic_aneurysm_and_aortic_dissection|Marfan_syndrome ClinVar