Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865800:139865853:[+] chr14:74961719:74961786:[+] nonBSJ supported 3UTR

circRNA 5':CAGUGU-CUUCCAGAAAG-----AAAUCCAGG-UCUUCCAGUCAGU-CA----GUGUC--UUCCAGAA 3'


            |||: |||| |||| || |||||| ||||| |:| || || ||| | |:|||||


target  3':UUCAUUUGAAGAUCUUAAGAUGAUUAAGGUCCAAGAAGUUUAACCAUGUUGACCACUGUUAGGGUCUC 5'

 -34.00 1 RIC-seq
chrX:139865800:139865859:[+] chr14:74961713:74961786:[+] nonBSJ supported 3UTR

circRNA 5':CAGUGU-CUUCCAGAAAG-----AAAUCCAGG-UCUUCCAGUCAGU-CA----GUGUC--UUCCAGAAAAAUCU 3'


            |||: |||| |||| || |||||| ||||| |:| || || ||| | |:||||| |:|


target  3':UUCAUUUGAAGAUCUUAAGAUGAUUAAGGUCCAAGAAGUUUAACCAUGUUGACCACUGUUAGGGUCUCAGUGGU 5'

 -35.20 10 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr14:74961713:74961786:[+] target - chr14:74961725-74961726 G>A PACA-CA ICGC
chr14:74961719:74961786:[+] target - chr14:74961725-74961726 G>A PACA-CA ICGC