Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866633:139866656:[+] chr10:30306702:30306724:[-] nonBSJ supported 3UTR

circRNA 5':UCUCCAGGGCUUCCAGCAUCUGCU 3'


            ||| :||||||||| |||:|


target  3':UGAGUCGUCGAAGGUCGAAGAUG 5'

 -29.20 13 RIC-seq
chrX:139866254:139866278:[+] chr10:30317732:30317758:[-] nonBSJ supported CDS

circRNA 5':AAAGCC--AUGUCUUC-CAGACUAUCCA 3'


            |||| |||||||| |||| |:||


target  3':GUUCGAAAUACAGAAGUGUCUU-UGGGA 5'

 -23.90 1 RIC-seq
chrX:139866260:139866299:[+] chr10:30317725:30317760:[-] nonBSJ supported CDS

circRNA 5':AUGUCUUCCAGACUAUCCAUGUCUUC-CAGAAAAUCCUUGU 3'


            |:|| || || || |||||||| |||||| ||:||


target  3':AAUAGCAGUUC-GAAA--UACAGAAGUGUCUUU--GGGACC 5'

 -27.10 23 RIC-seq
chrX:139866260:139866299:[+] chr10:30317726:30317760:[-] nonBSJ supported CDS

circRNA 5':AUGUCUUCCAGACUAUCCAUGUCUUC-CAGAAAAUCCUUGU 3'


            |:|| || || || |||||||| |||||| ||:||


target  3': AUAGCAGUUC-GAAA--UACAGAAGUGUCUUU--GGGACC 5'

 -26.60 2 RIC-seq