Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865829:139865846:[+] chr9:86586590:86586604:[-] nonBSJ supported CDS

circRNA 5':UCCAGUCAGUCAGUGUCU 3'


            || ||| || | |||


target  3':CGG-CAG-CAUUGCCAG 5'

 -7.30 1 RIC-seq
chrX:139865829:139865848:[+] chr9:86586590:86586606:[-] nonBSJ supported CDS

circRNA 5':UCCAGUCAGUCAGUGUCUUC 3'


            || ||| || | ||||:


target  3':CGG-CAG-CAUUGCCAGAG 5'

 -9.10 2 RIC-seq
chrX:139865829:139865849:[+] chr9:86586590:86586607:[-] nonBSJ supported CDS

circRNA 5':UCCAGUCAGUCAGUGUCUUCC 3'


            || ||| || | ||||:|


target  3':CGG-CAG-CAUUGCCAGAGG 5'

 -11.80 24 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr9:86586590:86586604:[-] target 3775859 chr9:86586595-86586596 CG>C Au-Kline_syndrome ClinVar
chr9:86586590:86586604:[-] target 503601 chr9:86586596-86586597 G>GT Au-Kline_syndrome ClinVar
chr9:86586590:86586606:[-] target 3775859 chr9:86586595-86586596 CG>C Au-Kline_syndrome ClinVar
chr9:86586590:86586606:[-] target 503601 chr9:86586596-86586597 G>GT Au-Kline_syndrome ClinVar
chr9:86586590:86586607:[-] target 3775859 chr9:86586595-86586596 CG>C Au-Kline_syndrome ClinVar
chr9:86586590:86586607:[-] target 503601 chr9:86586596-86586597 G>GT Au-Kline_syndrome ClinVar