Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865763:139865798:[+] chr9:94172145:94172187:[-] nonBSJ supported CDS

circRNA 5':GUGUCUUC-----CAGAAAGAAAUCCAGGUCUUCCA--GUCAA 3'


            ||||||| |||| ||| ||| :|||


target  3':AGCAGAAGAGGUAGUCUACUGAAAGGAUGGUGUGGUAGUAGUC 5'

 -17.50 2 RIC-seq
chrX:139865763:139865800:[+] chr9:94172145:94172183:[-] nonBSJ supported CDS

circRNA 5':GUGUCU--UCCAGAAAGAAAUCCAGGUCUU-CCAGUCAAUC 3'


            ||||| |||| ||| ||:| ||| |||


target  3':AGCAGAAGAGGUAG-UCUACUGAA--AGGAUGGUGUGGUAGU 5'

 -17.20 56 RIC-seq
chrX:139865766:139865798:[+] chr9:94172150:94172183:[-] nonBSJ supported CDS

circRNA 5': UCUUC--CAGAAAGAAAUCCAGGUCUUCCAGUCAA 3'


            |||:| |||| ||| ||| |||


target  3':AAGAGGUAGUCUACUGAAAGGAUGGUGUGGU-AGU 5'

 -14.10 1 RIC-seq