Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865890:139865909:[+] chr9:15744621:15744641:[+] nonBSJ supported CDS

circRNA 5': CAAUCCACAUC-UUCCGGAAA 3'


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target  3':CGUUAU-UGUGGAAAGGCUUUA 5'

 -15.20 1 RIC-seq
chrX:139865895:139865909:[+] chr9:15744621:15744636:[+] nonBSJ supported CDS

circRNA 5':CACAUC-UUCCGGAAA 3'


            |||:| |||||:||


target  3':UUGUGGAAAGGCUUUA 5'

 -14.50 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865890:139865909:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865895:139865909:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC