Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866741:139866775:[+] chr9:34398280:34398310:[-] nonBSJ supported CDS

circRNA 5':AAC-UGGCUCAAUAUCCAUGUCUUCCA-ACGUC-UCCA 3'


            || :|||||| ||||||||| ||::| |||


target  3':AUGUGCCGAGU-------ACAGAAGGUGUGUGGAAGGA 5'

 -29.90 1 RIC-seq
chrX:139866742:139866775:[+] chr9:34398280:34398310:[-] nonBSJ supported CDS

circRNA 5': AC-UGGCUCAAUAUCCAUGUCUUCCA-ACGUC-UCCA 3'


            || :|||||| ||||||||| ||::| |||


target  3':AUGUGCCGAGU-------ACAGAAGGUGUGUGGAAGGA 5'

 -29.60 13 RIC-seq
chrX:139866743:139866775:[+] chr9:34398283:34398310:[-] nonBSJ supported CDS

circRNA 5':CUGGCUCAAUAUCCAUGUCUUCCA-ACGUC-UCCA 3'


            ||||||| ||||||||| ||::| |||


target  3':UGCCGAGU-------ACAGAAGGUGUGUGGAAGGA 5'

 -29.20 1 RIC-seq