Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866620:139866648:[+] chr8:107751741:107751763:[+] nonBSJ supported 5UTR

circRNA 5':AGGUCUUCCAGCAUCUCCAGGGCUUCCAG 3'


            |||| || || :|:| ||||


target  3':ACCAGCUUUUCUAAG----UCUG-AGGU 5'

 -13.30 1 RIC-seq
chrX:139866620:139866649:[+] chr8:107751740:107751763:[+] nonBSJ supported 5UTR

circRNA 5':AGGUCUUCCAGCAUCUCCAGGGCUUCCAGC 3'


            |||| || || :|:| |||||


target  3':ACCAGCUUUUCUAAG----UCUG-AGGUC 5'

 -15.50 14 RIC-seq
chrX:139866620:139866657:[+] chr8:107751713:107751763:[+] nonBSJ supported 5UTR

circRNA 5':AGGUC-------UUCCAGCAUCUCCAGG---GC-UUC-C---AGC-AUCUGCUC 3'


            |||| || ||| ||||||| || ||| | ||| |:|||||


target  3':ACCAGCUUUUCUAA-GUCU--GAGGUCCAGACGAAAGUGACAUCGUUGGACGAA 5'

 -31.10 2 RIC-seq
chrX:139866620:139866664:[+] chr8:107751698:107751763:[+] nonBSJ supported 5UTR

circRNA 5':AGGUC-------UUCCAGCAUCUCCAGG---GC-UUC-C---AGC-AUCUGCUC---------GUCUUCC 3'


            |||| || ||| ||||||| || ||| | ||| |:||||| ||||||


target  3':ACCAGCUUUUCUAA-GUCU--GAGGUCCAGACGAAAGUGACAUCGUUGGACGAAACUUAAAUACAGAAG 5'

 -35.40 1 RIC-seq
chrX:139866620:139866665:[+] chr8:107751697:107751763:[+] nonBSJ supported 5UTR

circRNA 5':AGGUC-------UUCCAGCAUCUCCAGG---GC-UUC-C---AGC-AUCUGCUC---------GUCUUCCA 3'


            |||| || ||| ||||||| || ||| | ||| |:||||| |||||||


target  3':ACCAGCUUUUCUAA-GUCU--GAGGUCCAGACGAAAGUGACAUCGUUGGACGAAACUUAAAUACAGAAGG 5'

 -39.60 10 RIC-seq
chrX:139866629:139866654:[+] chr8:107371831:107371852:[+] nonBSJ supported 5UTR

circRNA 5':AGCAUCUCCAGGGC-UUCCAGCAUCUG 3'


            |||: :|:| || ||||| ||


target  3':CUGUG-----UCUGUAACGUCGUUGAA 5'

 -12.80 30 RIC-seq