Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865468:139865497:[+] chr7:45755350:45755377:[+] nonBSJ supported 3UTR

circRNA 5':AUCCAUGUCU-UCCGGACAAUCCAUGUCUUC 3'


            ||||: ||| ||||||| ||| |||||:


target  3':CGGGUGGAGACAGGCCUG--AGG-ACAGAGU 5'

 -33.40 2 RIC-seq
chrX:139865510:139865561:[+] chr7:45761065:45761114:[+] nonBSJ supported 3UTR

circRNA 5':AGUCUUCCAGUAA-AUCAAGUCUUCCAGCAAAUCCAGUCUUCCA-GCAAUUACU 3'


            |||| || |:|| |||:|| ||| || ||||


target  3': CAGACCUCCACGGUGGUAAAGAGGGGUAAACUA--CAGUCUCUCCGA-AAUGU 5'

 -17.00 1 RIC-seq
chrX:139865511:139865561:[+] chr7:45761065:45761115:[+] nonBSJ supported 3UTR

circRNA 5': GUCUUCCAGUAA-AUCAAGUCUUCCAGCAAAUCCAGUCUUCCA-GCAAUUACU 3'


            |||| || |:|| |||:|| ||| || ||||


target  3':ACAGACCUCCACGGUGGUAAAGAGGGGUAAACUA--CAGUCUCUCCGA-AAUGU 5'

 -18.50 1 RIC-seq
chrX:139866300:139866344:[+] chr7:45756970:45757015:[+] nonBSJ supported 3UTR

circRNA 5':CUUCCCUCAAAUCCAUAGCUUCCGAAAAAU--CCAGGUCUUCCAGGA 3'


            ||||| ||||| || |||:: |::| |||


target  3':AAAGGGUGUUUAUUUUUCCUUCAACAAAAAGUGGUUU-GGGGUUCCC 5'

 -21.30 1 RIC-seq
chrX:139866436:139866496:[+] chr7:45757129:45757184:[+] nonBSJ supported 3UTR

circRNA 5':AGGUACGUCUUCCAACAAAGGUACGUCUUCCAACAAAGGUAUGU-CUUCCAACAAAGGUACG 3'


            ||: |||||| |||||| ||| |||:| |: |:| || |:||


target  3':CCCGAACAGAAGUAAAAA-CCAUGCUCAU--UUG--UCCGU-CGUGGACAGUGACCACGUGA 5'

 -30.20 1 RIC-seq
chrX:139866472:139866505:[+] chr7:45757151:45757184:[+] nonBSJ supported 3UTR

circRNA 5':AGGUAUGUCUUCCAACAAAGGUACGUCUUC-CAGA 3'


            ||: ||||||| |||||| |||


target  3':CCCGAACAGAAGUAAAAA-CCAUGCUCAUUUGUCC 5'

 -24.00 1 RIC-seq
chrX:139866732:139866764:[+] chr7:45756488:45756519:[+] nonBSJ supported 3UTR

circRNA 5':UCUUCCAUCAACUGGCUCAAUA-UCCAUGUCUUC 3'


            |:|| |||||| :|| ||||||


target  3': GGAGACCACA-ACCGAGGACCGGGGAACAGAAA 5'

 -21.90 1 RIC-seq
chrX:139866743:139866764:[+] chr7:45756488:45756510:[+] nonBSJ supported 3UTR

circRNA 5':CUGGCUCAAUA-UCCAUGUCUUC 3'


            |||||| :|| ||||||


target  3':AACCGAGGACCGGGGAACAGAAA 5'

 -21.30 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866300:139866344:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC