Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866311:139866353:[+] chr8:80677678:80677709:[-] nonBSJ supported CDS

circRNA 5':UCCAUAGCUU-CCGAAAAAUCCAGGUCUUCCAGGAAAUCCGUGU 3'


            || :|||:| || ||| || ||||||


target  3':CGG-GUCGGACGGGA--------CCACCACG-CCA--AGGCACC 5'

 -20.70 15 RIC-seq
chrX:139866314:139866353:[+] chr8:80677680:80677709:[-] nonBSJ supported CDS

circRNA 5':AUAGCUU-CCGAAAAAUCCAGGUCUUCCAGGAAAUCCGUGU 3'


            ||||:| || ||| || ||||||


target  3':GGUCGGACGGGA--------CCACCACG-CCA--AGGCACC 5'

 -18.70 1 RIC-seq
chrX:139866316:139866345:[+] chr8:80677937:80677957:[-] nonBSJ supported CDS

circRNA 5':AGCUUCCGAAAAAUCCAGGUCUUCCAGGAA 3'


            ||||| | |||||: |||| ||


target  3': UGAAGAC------GGUCCGUAAGGG-CU 5'

 -18.30 4 RIC-seq
chrX:139866328:139866353:[+] chr8:80677687:80677709:[-] nonBSJ supported CDS

circRNA 5':AUCCAGGUCUUCCAGGAAAUCCGUGU 3'


            ||| ||| || ||||||


target  3':CGGGACCACCACG-CCA--AGGCACC 5'

 -16.20 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866311:139866353:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866314:139866353:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866316:139866345:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866314:139866353:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC