Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866637:139866665:[+] chr7:86509066:86509082:[-] nonBSJ supported 3UTR

circRNA 5':CAGGGCUUCCAGCAUCUGCUCGUCUUCCA 3'


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target  3':AUCCCGAAG----------AGCAAU-GG 5'

 -17.30 16 RIC-seq
chrX:139865744:139865754:[+] chr7:86522365:86522375:[-] nonBSJ supported CDS

circRNA 5':UAGAUCUUCCA 3'


            ||| ||||


target  3':UUCUUUAAGGA 5'

 -7.00 1 RIC-seq
chrX:139865773:139865784:[+] chr7:86522364:86522375:[-] nonBSJ supported CDS

circRNA 5':GAAAGAAA-UCCA 3'


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target  3': UUUCUUUAAGGA 5'

 -8.40 1 RIC-seq
chrX:139865812:139865833:[+] chr7:86522364:86522387:[-] nonBSJ supported CDS

circRNA 5':GAAAGAAA-UCCA--GGUCUUCCAG 3'


            ||||||| ||| ::| |||


target  3': UUUCUUUAAGGAAAUUACGUGGUA 5'

 -9.40 44 RIC-seq
chrX:139866326:139866350:[+] chr7:86556117:86556144:[-] nonBSJ supported CDS

circRNA 5':AAAUCCAGGUCUUCCA---GGA-AAUCCG 3'


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target  3': UUAGGUCCCAACGUUCCGCCUGUUAGGA 5'

 -18.90 25 RIC-seq