Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865377:139865420:[+] chr7:21948066:21948112:[-] nonBSJ supported CDS

circRNA 5':CUCCGGGUCUUCCA-GCG-ACUUCAAGU--CUU--CCAAUAAU-CUCAAGG 3'


            ||| |||||| || ||: ||| ||| ||| |||||:


target  3':AAGG---AGAAGGAGCGAGUGGU-UUCUACGAAACGGUAGUAGUGAGUUUA 5'

 -21.90 1 RIC-seq
chrX:139865382:139865430:[+] chr7:21948050:21948088:[-] nonBSJ supported CDS

circRNA 5':GGUCUUCCAGCGACUUCAAGUCUUCCAAUAAUCUCAAGGUCUUCCAGAU 3'


            |||||| ||||| |||||| :||| | || |||:|


target  3':AUAGAAGAA----GAAGU--AGAAGGAGAA-GGAG--CGAGU-GGUUUC 5'

 -25.20 1 RIC-seq
chrX:139865382:139865454:[+] chr7:21948050:21948107:[-] nonBSJ supported CDS

circRNA 5':GGUCUUCCAGCGACUUCAAGUCUUCCAAUAAUCUCAAGGUCUUCCAGAUAAUCCU--GA-GCUU--CCAGAAAAUC-CA 3'


            |||||| ||||| |||||| |||||| || || |||| ||| ||| |


target  3':AUAGAAGAA----GAAGU--AGAAGG-------------AGAAGGAGCGAGUGGUUUCUACGAAACGGUAG--UAGUGA 5'

 -31.00 11 RIC-seq