Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865804:139865818:[+] chr7:50198643:50198657:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCAGAAAGAA 3'


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target  3':AAGAAAGACCUUCUG 5'

 -4.00 5 RIC-seq
chrX:139865821:139865832:[+] chr7:50198650:50198660:[+] nonBSJ supported CDS

circRNA 5':CCAGGUCUUCCA 3'


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target  3': GUAAAGAAAGA 5'

 -3.00 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr7:50198643:50198657:[+] target - chr7:50198655-50198656 G>C PRAD-CA ICGC
chr7:50198650:50198660:[+] target - chr7:50198655-50198656 G>C PRAD-CA ICGC