Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865432:139865494:[+] chr5:131285809:131285880:[-] nonBSJ supported 3UTR

circRNA 5': AUCCU----------------------------GAGC--UUC--CAGAAAAUCCACAUCUUCCAGACAAUCCAUGUCUUCCGGACAAUCCAUGUC 3'


            ||||: :||| ||| ||:||||| |||||| |||:|| |||||:


target  3':UUAGGGGAGCUAAAAAUUUUUAACUUUCACCUUAUUCGUUAAGAAGUUUUUUA----------------UAGGUA-AGAGGG-------GGUACGU 5'

 -27.00 9 RIC-seq
chrX:139865435:139865476:[+] chr5:131285841:131285888:[-] nonBSJ supported 3UTR

circRNA 5':CUGAGC--UUC--CAGAAA--AUCCACA-UCUUCCAGACAAUCCAUGUC 3'


            |:||| ||| ||:||| ||||| ||::||| |||: ||:


target  3':UAUUCGUUAAGAAGUUUUUUAUAGGUAAGAGGGGGUACGUUGACAACG 5'

 -25.70 2 RIC-seq
chrX:139865436:139865494:[+] chr5:131285841:131285880:[-] nonBSJ supported 3UTR

circRNA 5': UGAGC--UUC--CAGAAAAUCCACAUCUUCCAGACAAUCCAUGUCUUCCGGACAAUCCAUGUC 3'


            |:||| ||| ||:||||| |||||| |||:|| |||||:


target  3':UAUUCGUUAAGAAGUUUUUUA----------------UAGGUA-AGAGGG-------GGUACGU 5'

 -26.60 2 RIC-seq
chrX:139865538:139865548:[+] chr5:131285808:131285818:[-] nonBSJ supported 3UTR

circRNA 5':AAAUCCAGUCU 3'


            ||||| ||


target  3':AUUAGGGGAGC 5'

 -7.30 13 RIC-seq