Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865968:139865989:[+] chr4:185580500:185580535:[+] nonBSJ supported 5UTR

circRNA 5': CCAUGUCU----------UCCAGA--AAAUCCAU 3'


            |||| ||: ||||:| |||| |||


target  3':AGGUAGAGGAUGAAACGUAAGGUUUCGUUUAUGUAC 5'

 -13.40 2 RIC-seq
chrX:139865968:139865990:[+] chr4:185580499:185580535:[+] nonBSJ supported 5UTR

circRNA 5': CCAUGUCU----------UCCAGA--AAAUCCAUG 3'


            |||| ||: ||||:| |||| ||||


target  3':AGGUAGAGGAUGAAACGUAAGGUUUCGUUUAUGUACU 5'

 -15.80 10 RIC-seq
chrX:139865970:139866029:[+] chr4:185580500:185580557:[+] nonBSJ supported 5UTR

circRNA 5':AUGUCUUCCAGAAAAUCCAUGUCUUCCAGUAACCU-CCCAGUCUUCCAGAAAAUCCACGUC 3'


            |||| |||| |:|| |||| ||| | |: |||||:| ||:|


target  3':AACAGUGUUCCAUUUA--UGCAACAGGUAGA-GGAUGAAACGUAAGGUUUCGUUUAUGUAC 5'

 -21.50 20 RIC-seq
chrX:139866095:139866116:[+] chr4:185580512:185580535:[+] nonBSJ supported 5UTR

circRNA 5': CCAUGUCUU-CCAGAAAAUCCAC 3'


            |||| ||:| | ||||


target  3':AGGUAGAGGAUGAAACGUAAGGUU 5'

 -12.30 2 RIC-seq
chrX:139866150:139866164:[+] chr4:185580510:185580535:[+] nonBSJ supported 5UTR

circRNA 5': CCAUGUCU----------UCCAGAA 3'


            |||| ||: ||||:|


target  3':AGGUAGAGGAUGAAACGUAAGGUUUC 5'

 -13.00 1 RIC-seq