Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865671:139865701:[+] chr5:90046385:90046408:[+] nonBSJ supported CDS

circRNA 5':AUGUCUUCCAGAAAAAUCUGUGUCUUCCACC 3'


            |:|||| ||::| ||||||||


target  3':GAUAGAACG-------AGGUAAAGAAGGUGA 5'

 -18.10 2 RIC-seq
chrX:139866369:139866389:[+] chr5:90004692:90004724:[+] nonBSJ supported CDS

circRNA 5':CGUCUUCCAACAA-------------AGCCAUGU 3'


            |||| |||||||


target  3':UCAGACCCUCCUUUACUUCAACUUCGUCGGUAC 5'

 -11.60 1 RIC-seq
chrX:139866507:139866529:[+] chr5:90086844:90086879:[+] nonBSJ supported CDS

circRNA 5':AAUCCA---CG--UCUUCCAAC--------CAAGCC 3'


            ||||| || ||:||| | |||||


target  3':CUAGGUCAAGCCGAGGAGGGAGAUGUCUUUGUUCGA 5'

 -16.00 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr5:90004692:90004724:[+] target 3376959 chr5:90004703-90004704 C>A Usher_syndrome_type_2C ClinVar
chr5:90004692:90004724:[+] target 438171 chr5:90004709-90004710 C>G Usher_syndrome|not_provided ClinVar