Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866342:139866361:[+] chr5:37001152:37001170:[+] nonBSJ supported CDS

circRNA 5':GGAAAUCCGUGUCUUCCAGC 3'


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target  3': UUUUAGGUAUAGAAGGUUU 5'

 -24.90 1 RIC-seq
chrX:139866342:139866368:[+] chr5:37001146:37001170:[+] nonBSJ supported CDS

circRNA 5':GGAAAUCCGUGUCUUCCAGCAAAUCCA 3'


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target  3': UUUUAGGUAUAGAAGGUUUAAUAGG 5'

 -29.80 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr5:37001146:37001170:[+] target 2738661 chr5:37001161-37001162 T>TA Cornelia_de_Lange_syndrome_1 ClinVar
chr5:37001152:37001170:[+] target 2738661 chr5:37001161-37001162 T>TA Cornelia_de_Lange_syndrome_1 ClinVar