Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865420:139865468:[+] chr4:148554074:148554122:[+] nonBSJ supported CDS

circRNA 5': GUC-UUCCAGAUAAUCCUGAGCUUC-CAGAAAAUCCA-CAUCUU---CCAGACAA 3'


            |:| |||| | |: |||| |||||| || ||| ||| |||


target  3':ACGGUAAGGGU-----GCAUACGAAAAGUCUUUAUUGCGGUUGAAAAUGGU-UGU 5'

 -18.30 1 RIC-seq
chrX:139865420:139865469:[+] chr4:148554073:148554122:[+] nonBSJ supported CDS

circRNA 5': GUC-UUCCAGAUAAUCCUGAGCUUC-CAGAAAAUCCA-CAUCUU---CCAGACAAU 3'


            |:| |||| | |: |||| |||||| || ||| ||| ||||


target  3':ACGGUAAGGGU-----GCAUACGAAAAGUCUUUAUUGCGGUUGAAAAUGGU-UGUU 5'

 -19.00 12 RIC-seq
chrX:139865420:139865473:[+] chr4:148554068:148554122:[+] nonBSJ supported CDS

circRNA 5': GUC-UUCCAGAUAAUCCUGAGCUUC-CAGAAAAUCCA-CAUCUU---CCAGACAAUCCAU 3'


            |:| |||| | |: |||| |||||| || ||| ||| |||| ||


target  3':ACGGUAAGGGU-----GCAUACGAAAAGUCUUUAUUGCGGUUGAAAAUGGU-UGUUUCGUU 5'

 -20.50 8 RIC-seq
chrX:139865453:139865511:[+] chr4:148554085:148554129:[+] nonBSJ supported CDS

circRNA 5':CACAUCUU-CCAGACAAUCCAUGUCUUCCGGACAAUCCAUGUCUUCCAAGAA---GCUCCAAG 3'


            ||| || ||| :|||:|| ||| ||| |||| :| ||||


target  3':AUGUCAAACGGUAA---GGGUGCA--------------UAC-GAAAAGUCUUUAUUGCGGUUG 5'

 -18.00 1 RIC-seq