Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865390:139865443:[+] chr4:145629328:145629374:[+] nonBSJ supported CDS

circRNA 5':AGCGACUU-CAAGUCU---UCCAAUAAUCUCAAGGUCUUCCAGAUAAU-C-CUGAGCUUC 3'


            ||| || |||| |||| ||||| | ||||||:|


target  3':GUGCAACGUGUACAGACACAGGUGU-------------AGGUCGGCAUCGUGACUCGGAC 5'

 -25.40 14 RIC-seq
chrX:139865391:139865443:[+] chr4:145629328:145629374:[+] nonBSJ supported CDS

circRNA 5': GCGACUU-CAAGUCU---UCCAAUAAUCUCAAGGUCUUCCAGAUAAU-C-CUGAGCUUC 3'


            ||| || |||| |||| ||||| | ||||||:|


target  3':GUGCAACGUGUACAGACACAGGUGU-------------AGGUCGGCAUCGUGACUCGGAC 5'

 -25.60 1 RIC-seq
chrX:139865400:139865443:[+] chr4:145629328:145629363:[+] nonBSJ supported CDS

circRNA 5':AGUCU---UCCAAUAAUCUCAAGGUCUUCCAGAUAAU-C-CUGAGCUUC 3'


            |||| |||| ||||| | ||||||:|


target  3':ACAGACACAGGUGU-------------AGGUCGGCAUCGUGACUCGGAC 5'

 -23.50 1 RIC-seq
chrX:139865419:139865443:[+] chr4:145629328:145629357:[+] nonBSJ supported CDS

circRNA 5':GGUCU---UCCAGAUAAU-C-CUGAGCUUC 3'


            |||: ||||| | ||||||:|


target  3':ACAGGUGUAGGUCGGCAUCGUGACUCGGAC 5'

 -21.70 1 RIC-seq