Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866296:139866323:[+]	chr5:5463760:5463790:[+]	nonBSJ supported	CDS	circRNA 5':UUGUCUUCCCUCAAAUC-CAUAGCUU--CCG 3' \|\|\|\|\|:\| \|\| \|\|:\|\| \|\| target 3':UACAGAGGUCCUUACAGUGUGUCACACUGGA 5'	-14.50	12	RIC-seq
chrX:139866333:139866369:[+]	chr5:5463752:5463789:[+]	nonBSJ supported	CDS	circRNA 5':GGUCUUCCAGGAAAUCCGUGUCUUCCAG-----CAAA-UCCAC 3' \|\|\| \|\|\|\|\|\|\| :\|\|\|\| \|\|\| \| \|\|\|\|\| target 3':ACAG-AGGUCCU-----UACAGUGUGUCACACUGGACCAGGUGU 5'	-25.10	2	RIC-seq
chrX:139866333:139866370:[+]	chr5:5463752:5463789:[+]	nonBSJ supported	CDS	circRNA 5':GGUCUUCCAGGAAAUCCGUGUCUUCCAG-----CAAA-UCCACG 3' \|\|\| \|\|\|\|\|\|\| :\|\|\|\| \|\|\| \| \|\|\|\|\| target 3':ACAG-AGGUCCU-----UACAGUGUGUCACACUGGACCAGGUGU 5'	-26.60	11	RIC-seq
chrX:139866525:139866548:[+]	chr5:5463809:5463829:[+]	nonBSJ supported	CDS	circRNA 5':AAGCCAUGUCUUCCAGAAAAUCCA 3' \|:\|\|\| \| \|\|\|\|\|\|\| \|\|\| target 3':GUUGGU-C-GAAGGUCGAG-AGGA 5'	-21.40	21	RIC-seq
chrX:139866526:139866548:[+]	chr5:5463809:5463829:[+]	nonBSJ supported	CDS	circRNA 5': AGCCAUGUCUUCCAGAAAAUCCA 3' \|:\|\|\| \| \|\|\|\|\|\|\| \|\|\| target 3':GUUGGU-C-GAAGGUCGAG-AGGA 5'	-21.00	1	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chrX:139866296:139866323:[+]	circRNA	-	chrX:139866318-139866319	C>T	BTCA-JP	ICGC