Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865834:139865878:[+] chr4:119035959:119035996:[+] nonBSJ supported CDS

circRNA 5':UCAGUCAGU-GUCUUCCAGAAAAAUCUACGUCUUCCAC--CAAAUCCA 3'


            ||| |||| :|||:| |:|||||| || |||


target  3':UGUCUGUCAGUAGAGGAA----------GUAGAAGGAGAAGUCAAGGA 5'

 -25.20 1 RIC-seq
chrX:139865844:139865892:[+] chr4:119035964:119036023:[+] nonBSJ supported CDS

circRNA 5':UCUUCCAGAAAA-AUCUAC-GUCUUCCAC-------CAAAUCCAG-GUCUUCCAG-UCAA 3'


            |: |||||| |||:|| | |::| || || ||| :|||||| |||


target  3':UGGUGGUCUUGAGUAGGUGUCUGGGGUUGUCUGUCAGUAGAGGAAGUAGAAGGAGAAGUC 5'

 -32.30 14 RIC-seq
chrX:139865845:139865892:[+] chr4:119035964:119036023:[+] nonBSJ supported CDS

circRNA 5': CUUCCAGAAAA-AUCUAC-GUCUUCCAC-------CAAAUCCAG-GUCUUCCAG-UCAA 3'


            |: |||||| |||:|| | |::| || || ||| :|||||| |||


target  3':UGGUGGUCUUGAGUAGGUGUCUGGGGUUGUCUGUCAGUAGAGGAAGUAGAAGGAGAAGUC 5'

 -32.20 14 RIC-seq
chrX:139865847:139865892:[+] chr4:119035964:119036020:[+] nonBSJ supported CDS

circRNA 5':UCCAGAAAA-AUCUAC-GUCUUCCAC-------CAAAUCCAG-GUCUUCCAG-UCAA 3'


            |||||| |||:|| | |::| || || ||| :|||||| |||


target  3':UGGUCUUGAGUAGGUGUCUGGGGUUGUCUGUCAGUAGAGGAAGUAGAAGGAGAAGUC 5'

 -30.90 3 RIC-seq